OR10D5P Olfactory Receptor
| Gene Symbol | OR10D5P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-273, HsOR11.18.15P, ORL3514 |
| External Ids | HGNC: 14838 GeneBank: AF546252-AF546265, BK004570, NG_002254 ORDB: ORL3514 |
| Build #39 labels | OR10D5P |
| Chromosomal location | 11:124,054,793-124,055,726 (+) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10D1P | 68.65% | 303 |
| 64.61% | 308 | |
| OR10D4P | 64.63% | 294 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10D5 | 87% | 309 |
| Mouse | Or10d5 | 80% | 309 |
| Rat | Or10d5 | 80% | 309 |
| Cow | OR10D5C | 81% | 309 |
| Cow | OR10D5 | 81% | 309 |
| Cow | OR10D5D | 80% | 307 |
| Orang | OR10D5EP | 91% | 308 |
| Horse | OR10D5 | 86% | 309 |
| Horse | OR10D5G | 85% | 311 |
| Horse | OR10D5F | 85% | 309 |
| Horse | OR10D5H | 83% | 311 |
| Chimp | OR10D1 | 70% | 303 |
Sequence information
| Nucleotide sequence |
ATGAAGATAAAGAATCACACTCCAGTAACTGAGGTCCCCCTGATGGGAATCCCTCATACA AAGGGGATGGAAAATGTGCTTTTTGTCTTATTTCTGGCCTTCTACCTCTTCACCTTGCTG GGGAACCTACTCATTCTTCTGGCCGTCCTCACTTTCTCCAACCTCCACACCCCCATGTAT TTCTTCCTGGGAAACCTGTCTGTGTTTGACATATTTTTCCCTTCAGTGAGTTCCCCCAAA ATGATGCTCTGCTTAGTGGGACAAAGCTGCACCATCTCTTTCCAGGGTTGTGCCTCCCAG CTCTTCTTTCACCATTTCCTGGGTTGCACCGAGTGTTTCCTGTACACTGTGATGGCCTAT GACCGATTTGCAGCCATCTGCCACCCTTTGCCATACACGGTCATCATGAAACGCAGGGTG TGTGCCCTCCTGACGCTAGGCACCTGGACGGGGAGCTGTCTGCATGCATCTGTCCTCACA CTCCTCATCTTTAAGTTATCCTACTGTGGCCCCAATGAAGTGGACAATTTTTTTCTGTGA TATTCCGGTGGTGCTGCCCCTGGCCTGCGCAGACACCTCTCTAGCACGGACAGTGAGTTT CATCAACGTAGGTGTTGTTGCGCTCATGTGTTTTCTTCTTATCCTCACCTCTTATGCTTG CATTGTTATCTCTATACTGAAAATCAGTTCCTCAGAAGGTAGGCGCAGAGCCTTCTCAAC CTGCAGTGCCCATCTGACGTCCATCCTGCTCTTCTATGGACCAATAGTCCTCATTTATCT CCGACCTGCCTCCAGCCCTTGGCTGGACTCTGTGGTTCAGGTGTTGAATAATATTGTTAT CCCTTCCCTGAATCCTTTGATATATACTTTGAGAAACAAAGGTGTAAAGCTGGCACTGAG AAAGGTGCTCATTCAAGGAGTACATAATTGTGGA |
| Conceptual translation |
MKIKNHTPVTEVPLMGIPHTKGMENVLFVLFLAFYLFTLLGNLLILLAVLTFSNLHTPMY FFLGNLSVFDIFFPSVSSPKMMLCLVGQSCTISFQGCASQLFFHHFLGCTECFLYTVMAY DRFAAICHPLPYTVIMKRRVCALLTLGTWTGSCLHASVLTLLIFKLSYCGPNEVD\FFC DIPVVLPLACADTSLARTVSFINVGVVALMCFLLILTSYACIVISILKISSSEGRRRAFS TCSAHLTSILLFYGPIVLIYLRPASSPWLDSVVQVLNNIVIPSLNPLIYTLRNKGVKLAL RKVLIQGVHNCG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 123,925,533 | 123,925,533 | SNP | G/T | rs10466602 (DbSNP) | |
| 11 | 123,925,638 | 123,925,638 | SNP | C/T | rs17128298 (DbSNP) | |
| 11 | 123,925,974 | 123,925,974 | SNP | T/C | rs1453631 (DbSNP) | |
| 11 | 123,926,106 | 123,926,106 | SNP | T/C | rs1453630 (DbSNP) | |
| 11 | 124,054,826 | 124,054,826 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 124,055,267 | 124,055,267 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 124,055,399 | 124,055,399 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 11 (Hasin) | |||
| 11 | 123,925,400 | 123,928,433 | Deletion | #229 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.