OR11G2 Olfactory Receptor
Gene Symbol | OR11G21 (View this gene in GeneCards) |
Family | 11 |
Subfamily | G |
Pseudogene | No |
CORP pseudogene probability score | 0.04 (functional) |
Aliases | OR14-34, HsOR14.1.25, ORL3687 |
External Ids | HGNC: 15346 GeneBank: AB065897, AF399610, BK004453, NM_001005503 ORDB: ORL3687 |
Build #39 labels | OR11G2 |
Chromosomal location | 14:20,197,438-20,198,370 (+) |
Cluster | 14@20b |
Synteny | CLIC#32 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR11G1P | 80.07% | 306 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR11G2B | 80% | 311 |
Mouse | Or11g2 | 82% | 307 |
Rat | Or11g1 | 80% | 307 |
Rat | Or11g2 | 80% | 300 |
Cow | OR11G2C | 83% | 308 |
Orang | OR11G30P | 78% | 302 |
Horse | OR11G2G | 85% | 310 |
Horse | OR11G2F | 82% | 308 |
Chimp | OR11H6 | 63% | 307 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB463954 |
GNF Atlas2 | gnf1h02178_at |
Sequence information
Nucleotide sequence |
ATGAAAATCTTCAACAGCCCCAGCAACTCCAGCACCTTCACTGGCTTCATCCTCCTGGGC TTCCCTTGCCCCAGGGAGGGGCAGATCCTCCTCTTTGTGCTCTTCACTGTTGTTTACCTC CTGACCCTCATGGGCAATGGTTCCATCATCTGTGCTGTGCACTGGGATCAGAGACTCCAC GCCCCCATGTACATCCTGCTCGCCAACTTCTCCTTCTTGGAGATATGTTATGTCACCTCC ACAGTCCCCAGCATGCTGGCCAACTTCCTCTCTGACACCAAGATCATCTCGTTCTCTGGC TGCTTCCTCCAGTTCTACTTTTTCTTCTCCTTGGGCTCTACAGAATGCTTTTTCCTGGCA GTTATGGCATTTGATCGATACCTTGCCATCTGTCGGCCTCTACGCTATCCAACCATTATG ACCAGACGTCTCTGTACCAATCTTGTGGTCAATTGCTGGGTACTTGGTTTCATCTGGTTC TTGATTCCTATCGTCAACATCTCCCAAATGTCCTTCTGTGGATCTAGGATTATTGACCAC TTCCTATGTGACCCAGCTCCTCTTCTAACTCTCACTTGCAAAAAAGGCCCTGTGATAGAG CTTGTCTTTTCTGTCTTAAGTCCTCTGCCTGTCTTTATGCTCTTTCTCTTCATTGTGGGG TCCTATGCTCTGGTCGTGAGAGCTGTGTTGAGGGTCCCTTCAGCAGCTGGGAGAAGAAAG GCTTTCTCCACCTGTGGGTCTCACCTGGCTGTGGTTTCACTGTTCTACGGCTCAGTACTG GTCATGTATGGGAGCCCACCATCTAAGAATGAAGCTGGAAAGCAGAAGACTGTGACTCTG TTTTATTCTGTTGTTACCCCACTGCTTAACCCTGTGATATATAGTCTTAGGAACAAAGAT ATGAGAAAAGCTCTGAAGAAATTTTGGGGAACA |
Conceptual translation |
MKIFNSPSNSSTFTGFILLGFPCPREGQILLFVLFTVVYLLTLMGNGSIICAVHWDQRLH APMYILLANFSFLEICYVTSTVPSMLANFLSDTKIISFSGCFLQFYFFFSLGSTECFFLA VMAFDRYLAICRPLRYPTIMTRRLCTNLVVNCWVLGFIWFLIPIVNISQMSFCGSRIIDH FLCDPAPLLTLTCKKGPVIELVFSVLSPLPVFMLFLFIVGSYALVVRAVLRVPSAAGRRK AFSTCGSHLAVVSLFYGSVLVMYGSPPSKNEAGKQKTVTLFYSVVTPLLNPVIYSLRNKD MRKALKKFWGT Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
14 | 20,666,177 | 20,666,176 | Ins(1) | -/A | rs67847713 (DbSNP) | |
14 | 20,666,182 | 20,666,181 | Ins(1) | -/A | rs55781225 (DbSNP) | |
14 | 20,665,908 | 20,665,907 | Ins(1) | -/A | rs61106173 (DbSNP) | |
14 | 20,665,840 | 20,665,840 | NS | A/G | I/V | rs4981088 (DbSNP) |
14 | 20,665,627 | 20,665,627 | NS | A/G | S/G | rs45620333 (DbSNP) |
14 | 20,665,790 | 20,665,790 | NS | A/T | N/I | rs4981822 (DbSNP) |
14 | 20,665,887 | 20,665,887 | SYN | C/G | S/S | rs4981823 (DbSNP) |
14 | 20,197,681 | 20,197,681 | NS | G/A | V/I | 1000GP (CEU, CHBJPT) |
14 | 20,197,631 | 20,197,631 | NS | T/A | I/N | 1000GP (CEU, CHBJPT) |
14 | 20,197,728 | 20,197,728 | SYN | G/C | S/S | 1000GP (CEU, CHBJPT) |
14 | 100 | -100 | NS | T/A | I/N | 1000GP (YRI, YRI, YRI, YRI) |
14 | 100 | -100 | SYN | G/C | S/S | 1000GP (YRI) |
14 | 100 | -100 | nonsense SNP | C/A | C/* | 1000GP (YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
S45G | G49D | I84N | I99N | V116I | K128N | V183M | V232M | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|
1 | S | G | I | I | V | K | V | V | 48.69 | 0.222 |
2 | S | G | I | N | I | K | V | V | 43.39 | 0.222 |
3 | S | G | I | N | I | N | M | V | 3.76 | 0.222 |
4 | G | D | I | I | V | K | V | V | 2.07 | 0.222 |
5 | S | G | I | I | I | K | V | V | 1.00 | 0.222 |
6 | S | G | I | I | V | K | M | V | 0.31 | 0.222 |
7 | S | G | I | N | V | K | V | V | 0.23 | 0.222 |
8 | S | G | I | I | I | N | M | V | 0.15 | 0.222 |
9 | S | G | I | I | V | N | M | V | 0.08 | 0.222 |
10 | S | D | I | I | V | K | V | V | 0.08 | 0.222 |
11 | S | G | N | N | I | K | V | V | 0.08 | 0.222 |
12 | S | G | N | I | V | K | V | V | 0.08 | 0.222 |
13 | S | G | I | I | V | K | V | M | 0.08 | 0.222 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR11G2.aApr07-unspliced | main_exon | 5UTR | chr14 | 20,197,336 | 20,197,438 | + |
CDS | chr14 | 20,197,438 | 20,198,370 | + | ||
3UTR | chr14 | 20,198,370 | 20,198,373 | + |