OR11H1 Olfactory Receptor
| Gene Symbol | OR11H11 (View this gene in GeneCards) |
| Family | 11 |
| Subfamily | H |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR22-1, HsOR22.1.1, ORL3802 |
| External Ids | HGNC: 15404 GeneBank: AB065933, AF399611, BK004492, NM_001005239, XM_495967 ORDB: ORL3802 |
| Build #39 labels | OR11H1 |
| Chromosomal location | 22:15,528,191-15,529,135 (-) |
| Cluster | 22@16 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR11H2 | 98.41% | 315 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR11H12 | 83% | 310 |
| Mouse | Or11j4 | 62% | 311 |
| Rat | Or11j4 | 63% | 302 |
| Cow | OR11H12 | 83% | 315 |
| Cow | OR11H12B | 82% | 315 |
| Orang | OR11H12 | 93% | 315 |
| Orang | OR11H12CP | 91% | 315 |
| Orang | OR11H12D | 91% | 315 |
| Horse | OR11H12 | 86% | 315 |
| Chimp | OR11H12 | 97% | 315 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h01851_at |
Sequence information
| Nucleotide sequence |
ATGAATGTCTCTGAGCCAAATTCCAGCTTTGCTTTTGTAAATGAATTTATACTCCAAGGT TTCTCTTGTGAGTGGACAATTCAGATCTTCCTCTTCTCACTCTTTACTACAACATATGCA CTGACTATAACAGGGAATGGAGCCATTGCTTTTGTCCTGTGGTGTGACCGGCGACTTCAC ACTCCCATGTACATGTTCCTGGGAAATTTCTCCTTTTTAGAGATATGGTATGTCTCTTCT ACAGTTCCCAAGATGTTGGTCAACTTCCTTTCAGAGAAAAAAAACATCTCCTTTGCTGGA TGTTTTCTCCAGTTTTATTTCTTCTTCTCTTTGGGTACATCAGAATGCTTGCTTTTGACT GTGATGGCCTTTGATCAGTACCTTGCTATCTGCCGTCCCTTGCTCTATCCTAATATCATG ACTGGGCATCTCTATGCCAAACTGGTCATACTGTGCTGGGTTTGTGGATTTCTGTGGTTC CTGATCCCCATTGTTCTCATCTCTCAGATGCCCTTCTGTGGCCCAAACATTATTGACCAT GTTGTGTGTGACCCAGGGCCACGATTTGCATTGGATTGTGTTTCTGCCCCAAGAATCCAA CTGTTTTGCTACACTCTAAGCTCATTAGTTATTTTTGGTAACTTCCTCTTTATTATTGGA TCCTATACTCTTGTCCTGAAAGCTATGTTGGGTATGCCTTCAAGCACTGGGAGACATAAG GCCTTCTCTACCTGTGGGTCTCATTTGGCTGTGGTATCACTGTGCTATAGCTCTCTTATG GTCATGTATGTGAGCCCAGGACTCGGACATTCTACAGGGATGCAGAAAATTGAAACTTTG TTCTATGCTATGGTGACCCCACTCTTCAATCCCCTTATCTATAGCCTCCAGAATAAGGAG ATAAAGGCAGCCCTGAGGAAAGTTCTGGGGAGTTCCAACATAATC |
| Conceptual translation |
MNVSEPNSSFAFVNEFILQGFSCEWTIQIFLFSLFTTTYALTITGNGAIAFVLWCDRRLH TPMYMFLGNFSFLEIWYVSSTVPKMLVNFLSEKKNISFAGCFLQFYFFFSLGTSECLLLT VMAFDQYLAICRPLLYPNIMTGHLYAKLVILCWVCGFLWFLIPIVLISQMPFCGPNIIDH VVCDPGPRFALDCVSAPRIQLFCYTLSSLVIFGNFLFIIGSYTLVLKAMLGMPSSTGRHK AFSTCGSHLAVVSLCYSSLMVMYVSPGLGHSTGMQKIETLFYAMVTPLFNPLIYSLQNKE IKAALRKVLGSSNII Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 51 (Hasin) | |||
| 22 | 16,053,758 | 17,300,320 | CopyNumber | Variation_8898 (DGV) |
| 22 | 16,053,758 | 17,524,203 | CopyNumber | Variation_34559 (DGV) |
| 22 | 16,055,421 | 16,467,142 | CopyNumber | Variation_32445 (DGV) |
| 22 | 16,081,115 | 17,057,138 | CopyNumber | Variation_3236 (DGV) |
| 22 | 16,085,001 | 16,463,023 | CopyNumber | Variation_73671 (DGV) |
| 22 | 16,124,247 | 16,504,327 | CopyNumber | Variation_7329 (DGV) |
| 22 | 16,129,865 | 17,277,462 | CopyNumber | Variation_4115 (DGV) |
| 22 | 16,257,060 | 16,459,518 | CopyNumber | Variation_73672 (DGV) |
| 22 | 16,346,026 | 16,461,480 | CopyNumber | Variation_79403 (DGV), Variation_90841 (DGV) |
| 22 | 16,367,425 | 16,572,669 | CopyNumber | Variation_5166 (DGV) |
| 22 | 16,379,229 | 16,519,909 | CopyNumber | Variation_0813 (DGV), Variation_2257 (DGV) |
| 22 | 16,445,003 | 16,461,480 | CopyNumber | Variation_79404 (DGV), Variation_90845 (DGV) |
| 22 | 16,449,063 | 16,449,265 | Del(-11) | #29(modil) |
| 22 | 16,449,384 | 16,449,455 | Del(-9) | #30(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR11H1.aApr07-unspliced | main_exon | 5UTR | chr22 | 15,528,158 | 15,528,191 | - |
| CDS | chr22 | 15,528,191 | 15,529,135 | - | ||
| 3UTR | chr22 | 15,529,135 | 15,529,138 | - | ||