OR13E1P Olfactory Receptor
| Gene Symbol | OR13E1P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR9-1, HsOR9.1.1P, ORL325 |
| External Ids | HGNC: 15107 GeneBank: AB065706, BK004614, NG_004377 ORDB: ORL325 |
| Build #39 labels | OR13E1P, OR13E2 |
| Chromosomal location | 9:35,859,025-35,859,980 (-) |
| Cluster | 9@36 |
| Synteny | CLIC#17 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C1P | 56.17% | 308 |
| OR13C7P | 58.06% | 310 |
| OR13D2P | 58.22% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13E1 | 82% | 316 |
| Mouse | Or13e8 | 75% | 315 |
| Rat | Or13e8 | 74% | 315 |
| Cow | OR13E1 | 81% | 319 |
| Orang | OR13D2 | 58% | 312 |
| Horse | OR13E17P | 70% | 290 |
| Chimp | OR13C7 | 58% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | CD652081 |
| mRNA | AL832569 |
| GNF Atlas2 | gnf1h05129_s_at |
| GNF Atlas2 | gnf1h06585_at |
Sequence information
| Nucleotide sequence |
ATGAAGTGGGCAAACCAGACAGCTGTGACGGAATACGTCCTGATGGGGCTACACGAGCAC TGTAACCTGGAGGTGGTCCTGTTTGTGTTCTGCCTGGGCATCTACTCCGTGAATGTGTTG GGGAACGCCCTCCTCATAGGGCTGAACGTGCTGCACCCTCGCCTGCACAACCCCATGTAC TTCTCAGCAACCTCTCCCTCATGGACATCTGCGGCACCTCCTCCTTTGTGCCTCTCATGC TAGACAATTTCCTGGAAACCCAGAGGACCATTTCCTTCCCTGGCTGTGCCCTGCAGATGT ACCTGACCCTGGCGCTGGGATCAACGGAGTGCCTGCTGCTGGCTGTGATGGCATATGACC GTTATGTGGCTATCTGCCAGCCGCTTAGGTACCCAGAGCTCATGAGTGGGCAGACCTGCA TGCAGATGGCAGCGCTGAGCTGGGGGACAGGCTTTGCCAACTCACTGCTACAGTCCATCC TTGTCTGGCACCTCCCCTTCTGTGGCCACGTCATCAACTACTTCTATGAGATCTTGGCAG TGCTAAAACTGGCCTGTGGGGACATCTCCCTCAATGCGCTGGCATTAATGGTGGCCACAG CCGTCCTGACACTGGCCCCCCTCTTGCTCATCTGCCTGTCTTACCTTTTCATCCTGTCTG CCATCCTTAGGGTACCCTCTGCTGCAGGCCGGTGCAAAGCCTTCTCCACCTGCTCAGCCC ACCGCACAGTGGTGGTGGTTTTTTATGGGACAATCTCCTTCATGTACTTCAAACCCAAGG CCAAGGATCCCAACGTGGATAAGACTGTCGCATTGTTCTACGGGGTTGTGACGCCCTCGC TGAACCCCATCATTTACAGCCTGAGGAATGCAGAGGTGAAAGCTGCCGTCCTAACTCTGC TGAGAGGAGGTTTGCTCTCCAGGAAAGCATCCCACTGCTACTGCTGCCCTCTGCCC |
| Conceptual translation |
MKWANQTAVTEYVLMGLHEHCNLEVVLFVFCLGIYSVNVLGNALLIGLNVLHPRLHNPMY F/SNLSLMDICGTSSFVPLMLDNFLETQRTISFPGCALQMYLTLALGSTECLLLAVMAY DRYVAICQPLRYPELMSGQTCMQMAALSWGTGFANSLLQSILVWHLPFCGHVINYFYEIL AVLKLACGDISLNALALMVATAVLTLAPLLLICLSYLFILSAILRVPSAAGRCKAFSTCS AHRTVVVVFYGTISFMYFKPKAKDPNVDKTVALFYGVVTPSLNPIIYSLRNAEVKAAVLT LLRGGLLSRKASHCYCCPLP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 35,859,195 | 35,859,195 | SNP | C/T | 1000GP (CEU) | |
| 9 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 160 (Hasin) | |||
| 9 | 35,857,022 | 35,860,077 | CopyNumber | #155 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.