OR1J2 Olfactory Receptor
| Gene Symbol | OR1J21 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.02 (functional) |
| Aliases | HSA5, HSA10, OR9-19, OST044, hg152, HsOR9.6.2, ORL48 |
| External Ids | HGNC: 8209 GeneBank: AB065717, AF179760, AF179767, AF399552, AY283941-AY283972, BK004448, HSHTPRX15, NM_054107 ORDB: ORL48 |
| Build #39 labels | OR1J2, OR1J5 |
| Chromosomal location | 9:122,510,802-122,511,740 (+) |
| Cluster | 9@125 |
| Synteny | CLIC#21 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1J1 | 75.16% | 306 |
| OR1J4 | 77.88% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1J6P | 69% | 310 |
| Mouse | Or1j4 | 77% | 309 |
| Rat | Or1j4 | 79% | 308 |
| Cow | OR1J4C | 75% | 312 |
| Orang | OR1J1 | 75% | 308 |
| Horse | OR1J29 | 74% | 312 |
| Chimp | OR1J4 | 79% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB528201 |
| GNF Atlas2 | gnf1h05925_at |
Sequence information
| Nucleotide sequence |
ATGAGCCCTGAGAACCAGAGCAGCGTGTCCGAGTTCCTCCTTCTGGGCCTCCCCATCCGG CCAGAGCAGCAGGCTGTGTTCTTCACCCTGTTCCTGGGCATGTACCTGACCACGGTGCTG GGGAACCTGCTCATCATGCTGCTCATCCAGCTGGACTCTCACCTTCACACCCCCATGTAC TTCTTCCTCAGCCACTTGGCTCTCACTGACATCTCCTTTTCATCTGTCACTGTCCCTAAG ATGCTGATGGACATGCGGACTAAGTACAAATCGATCCTCTATGAGGAATGCATTTCTCAG ATGTATTTTTTTATATTTTTTACTGACCTGGACAGCTTCCTTATTACATCAATGGCATAT GACCGATATGTTGCCATATGTCACCCTCTCCACTACACTGTCATCATGAGGGAAGAGCTC TGTGTCTTCTTAGTGGCTGTATCTTGGATTCTGTCTTGTGCCAGCTCCCTCTCTCACACC CTTCTCCTGACCCGGCTGTCTTTCTGTGCTGCGAACACCATCCCCCATGTCTTCTGTGAC CTTGCTGCCCTGCTCAAGCTGTCCTGCTCAGATATCTTCCTCAATGAGCTGGTCATGTTC ACAGTAGGGGTGGTGGTCATTACCCTGCCATTCATGTGTATCCTGGTATCATATGGCTAC ATTGGGGCCACCATCCTGAGGGTCCCTTCAACCAAAGGGATCCACAAAGCATTGTCCACA TGTGGCTCCCATCTCTCTGTGGTGTCTCTCTATTATGGGTCAATATTTGGCCAGTACCTT TTCCCGACTGTAAGCAGTTCTATTGACAAGGATGTCATTGTGGCTCTCATGTACACGGTG GTCACACCCATGTTGAACCCCTTTATCTACAGCCTTAGGAACAGGGACATGAAAGAGGCC CTTGGGAAACTCTTCAGTAGAGCAACATTTTTCTCTTGG |
| Conceptual translation |
MSPENQSSVSEFLLLGLPIRPEQQAVFFTLFLGMYLTTVLGNLLIMLLIQLDSHLHTPMY FFLSHLALTDISFSSVTVPKMLMDMRTKYKSILYEECISQMYFFIFFTDLDSFLITSMAY DRYVAICHPLHYTVIMREELCVFLVAVSWILSCASSLSHTLLLTRLSFCAANTIPHVFCD LAALLKLSCSDIFLNELVMFTVGVVVITLPFMCILVSYGYIGATILRVPSTKGIHKALST CGSHLSVVSLYYGSIFGQYLFPTVSSSIDKDVIVALMYTVVTPMLNPFIYSLRNRDMKEA LGKLFSRATFFSW Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 100 | -100 | NS | G/A | A/T | 1000GP (YRI, YRI) |
| 9 | 100 | -100 | SYN | C/T | F/F | 1000GP (YRI, YRI) |
| 9 | 122,511,156 | 122,511,156 | NS | G/A | A/T | 1000GP (CHBJPT) |
| 9 | 122,511,295 | 122,511,295 | NS | G/A | R/Q | 1000GP (CEU, CHBJPT) |
| 9 | 122,511,599 | 122,511,599 | NS | T/G | S/R | 1000GP (CEU) |
| 9 | 125,273,105 | 125,273,105 | NS | A/G | M/V | rs41277118 (DbSNP) |
| 9 | 125,273,435 | 125,273,435 | NS | A/G | T/A | rs41277120 (DbSNP) |
| 9 | 125,273,574 | 125,273,574 | NS | A/G | Q/R | rs4836891 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 78 (Hasin) | |||
| 9 | 125,272,981 | 125,276,019 | CopyNumber | #47 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A25T | A119T | R165Q | T279M | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | A | A | R | T | 76.42 | 0.098 |
| 2 | A | T | R | T | 12.52 | 0.141 |
| 3 | A | A | Q | T | 10.14 | 0.098 |
| 4 | A | A | R | M | 0.69 | 0.098 |
| 5 | A | A | Q | M | 0.15 | 0.098 |
| 6 | T | T | R | T | 0.08 | 0.141 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1J2andOR1Q1.bApr07 | exon_5UTR | chr9 | 122,464,025 | 122,464,749 | + | |
| exon_5UTR | chr9 | 122,468,561 | 122,469,185 | + | ||
| exon_5UTR | chr9 | 122,475,692 | 122,475,815 | + | ||
| exon_5UTR | chr9 | 122,502,778 | 122,502,870 | + | ||
| main_exon | 5UTR | chr9 | 122,510,789 | 122,510,802 | + | |
| CDS | chr9 | 122,510,802 | 122,511,740 | + | ||
| 3UTR | chr9 | 122,511,740 | 122,514,097 | + | ||