OR1Q1 Olfactory Receptor
| Gene Symbol | OR1Q11 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | Q |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | hRPK-465_F_21, OR9-25, OR9-A, HSTPCR106, OST226, HsOR9.6.8, ORL3243 |
| External Ids | HGNC: 8223 GeneBank: AB065722, AF399561, BK004228, HSTPCR106, NM_012364 ORDB: ORL3243 |
| Build #39 labels | OR1Q1 |
| Chromosomal location | 9:122,614,738-122,615,679 (+) |
| Cluster | 9@125 |
| Synteny | CLIC#21 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1L1 | 51.78% | 309 |
| OR1L4 | 52.1% | 309 |
| OR1L6 | 52.65% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1L6 | 54% | 310 |
| Mouse | Or1q1 | 81% | 308 |
| Rat | Or1q1 | 78% | 308 |
| Cow | OR1L6C | 53% | 302 |
| Orang | OR1Q1J | 94% | 315 |
| Horse | OR1Q4P | 71% | 310 |
| Chimp | OR1F1P | 55% | 303 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AI827216 |
| mRNA | X89667 |
| GNF Atlas2 | gnf1h07004_at |
Sequence information
| Nucleotide sequence |
ATGGACAACAGCAACTGGACCAGTGTGTCCCATTTTGTTCTCTTGGGCATTTCCACCCAC CCAGAAGAGCAAATCCCACTCTTCCTTGTTTTCTCACTCATGTACGCAATCAATATTTCT GGCAACTTGGCCATCATCACACTGATTCTCTCTGCTCCACGCCTCCACATCCCCATGTAC ATCTTCCTCAGTAACTTGGCCTTGACAGACATCTGCTTCACCTCCACCACGGTCCCCAAG ATGCTGCAGATTATTTTCTCCCCTACAAAGGTAATTTCCTACACAGGCTGTTTAGCCCAA ACTTATTTCTTCATTTGCTTCGCCGTCATGGAAAACTTCATCCTGGCTGTGATGGCCTAT GACAGGTACATTGCCATCTGCCACCCTTTCCACTACACTATGATCCTGACTAGAATGCTG TGTGTGAAGATGGTGGTCATGTGCCATGCTCTCTCCCACCTTCATGCCATGCTGCATACC TTTCTCATAGGCCAACTAATCTTCTGTGCAGATAACAGAATCCCCCACTTCTTCTGTGAC CTCTACGCTCTGATGAAGATCTCCTGCACCAGCACCTACCTCAACACCCTTATGATTCAC ACAGAAGGTGCTGTTGTAATCAGTGGAGCTCTGGCCTTCATTACTGCCTCCTATGCCTGC ATCATCCTGGTGGTCCTCCGGATCCCCTCAGCCAAGGGCAGGTGGAAAACCTTTTCTACC TGCGGCTCCCACCTCACTGTGGTGGCCATATTCTATGGCACCCTCAGTTGGGTCTACTTC CGGCCCCTTTCCAGCTATTCAGTGACCAAGGGTCGCATTATAACAGTCGTGTACACAGTG GTGACTCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAATGGGGATGTCAAGGGAGGC TTCATGAAATGGATGAGCAGAATGCAGACTTTTTTCTTTAGA |
| Conceptual translation |
MDNSNWTSVSHFVLLGISTHPEEQIPLFLVFSLMYAINISGNLAIITLILSAPRLHIPMY IFLSNLALTDICFTSTTVPKMLQIIFSPTKVISYTGCLAQTYFFICFAVMENFILAVMAY DRYIAICHPFHYTMILTRMLCVKMVVMCHALSHLHAMLHTFLIGQLIFCADNRIPHFFCD LYALMKISCTSTYLNTLMIHTEGAVVISGALAFITASYACIILVVLRIPSAKGRWKTFST CGSHLTVVAIFYGTLSWVYFRPLSSYSVTKGRIITVVYTVVTPMLNPFIYSLRNGDVKGG FMKWMSRMQTFFFR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 125,377,734 | 125,377,734 | NS | A/G | T/A | rs727913 (DbSNP) |
| 9 | 125,377,540 | 125,377,540 | NS | C/T | P/L | rs55957445 (DbSNP) |
| 9 | 125,377,087 | 125,377,087 | NS | G/A | R/Q | rs972925 (DbSNP) |
| 9 | 125,377,505 | 125,377,505 | NS | G/A | M/I | rs1329957 (DbSNP) |
| 9 | 125,377,223 | 125,377,223 | SYN | A/C | T/T | rs10985733 (DbSNP) |
| 9 | 125,377,022 | 125,377,022 | SYN | C/T | D/D | rs16911955 (DbSNP) |
| 9 | 122,615,455 | 122,615,455 | NS | A/G | T/A | 1000GP (CEU, CHBJPT) |
| 9 | 122,615,261 | 122,615,261 | NS | C/T | P/L | 1000GP (CEU) |
| 9 | 122,615,226 | 122,615,226 | NS | A/G | I/M | 1000GP (CEU, CHBJPT) |
| 9 | 122,614,808 | 122,614,808 | NS | A/G | Q/R | 1000GP (CEU, CHBJPT) |
| 9 | 100 | -100 | SYN | C/T | D/D | 1000GP (YRI, YRI) |
| 9 | 100 | -100 | NS | A/G | Q/R | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 125,376,917 | 125,379,958 | CopyNumber | #117 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| Q24R | I37T | Y120C | P175L | A183T | T240A | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|
| 1 | R | I | Y | P | A | T | 67.97 | 0.034 |
| 2 | Q | I | Y | P | A | T | 19.66 | 0.034 |
| 3 | R | I | Y | P | A | A | 10.75 | 0.114 |
| 4 | R | I | Y | P | T | T | 0.84 | 0.034 |
| 5 | R | I | C | P | A | A | 0.23 | 0.114 |
| 6 | R | I | Y | L | A | T | 0.23 | 0.034 |
| 7 | Q | T | Y | P | A | T | 0.23 | 0.034 |
| 8 | R | I | C | P | A | T | 0.08 | 0.034 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1J2andOR1Q1.aApr07-unspliced | main_exon | CDS | chr9 | 122,614,738 | 122,615,679 | + |
| 3UTR | chr9 | 122,615,679 | 122,615,682 | + | ||
| OR1J2andOR1Q1.eApr07 | exon_5UTR | chr9 | 122,610,032 | 122,610,050 | + | |
| main_exon | CDS_partial | chr9 | 122,614,738 | 122,615,007 | + | |
| exon_3UTR | chr9 | 122,619,360 | 122,619,567 | + | ||
| exon_3UTR | chr9 | 122,620,448 | 122,620,515 | + | ||
| exon_3UTR | chr9 | 122,637,106 | 122,637,236 | + | ||
| exon_3UTR | chr9 | 122,639,598 | 122,639,685 | + | ||