OR2T35 Olfactory Receptor
| Gene Symbol | OR2T351 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | 0.05 (functional) |
| Aliases | OR1-66, HsOR1.5.48 |
| External Ids | HGNC: 31257 GeneBank: AB065644, BK004475, NM_001001827 |
| Build #39 labels | |
| Chromosomal location | 1:248,638,290-248,639,258 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2T2 | 99.38% | 322 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2T2 | 89% | 321 |
| Mouse | Or2t35 | 83% | 321 |
| Rat | Or2t35 | 86% | 321 |
| Cow | OR2T2 | 87% | 321 |
| Orang | OR2T2P | 95% | 317 |
| Orang | OR2T2BP | 94% | 284 |
| Horse | OR2T2C | 81% | 321 |
| Horse | OR2T2 | 80% | 321 |
| Chimp | OR2T2 | 98% | 317 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB528813 |
Sequence information
| Nucleotide sequence |
ATGGGCATGGAGGGTCTTCTCCAGAACTCCACTAACTTCGTCCTCACAGGCCTCATCACC CATCCTGCCTTCCCCGGGCTTCTCTTTGCAGTAGTCTTCTCCATCTTTGTGGTGGCTATA ACAGCCAACTTGGTCATGATTCTGCTCATCCACATGGACTCCCGCCTCCACACACCCATG TACTTCTTGCTCAGCCAGCTCTCCATCATGGATACCATCTACATCTGTATCACTGTCCCC AAGATGCTCCAGGACCTCCTGTCCAAGGACAAGACCATTTCCTTCCTGGGCTGTGCAGTT CAAATCTTCTACCTGACCCTGATTGGAGGGGAATTCTTCCTGCTGGGTCTCATGGCCTAT GACCGCTATGTGGCTGTGTGCAACCCTCTACGGTACCCTCTCCTCATGAACCGCAGGGTT TGCTTATTCATGGTGGTCGGCTCCTGGGTTGGTGGTTCCTTGGATGGGTTCATGCTGACT CCTGTCACTATGAGTTTCCCCTTCTGTAGATCCCGAGAGATCAATCACTTTTTCTGTGAG ATCCCAGCCGTGCTGAAGTTGTCTTGCACAGACACGTCACTCTATGAGACCCTGATGTAT GCCTGCTGCGTGCTGATGCTGCTTATCCCTCTATCTGTCATCTCTGTGTCCTACACGCAC ATCCTCCTGACTGTCCACAGGATGAACTCTGCTGAGGGCCGGCGCAAAGCCTTTGCTACG TGTTCCTCCCACATTATGGTGGTGAGCGTTTTCTACGGGGCAGCCTTCTACACCAACGTG CTGCCCCACTCCTACCACACTCCAGAGAAAGATAAAGTGGTGTCTGCCTTCTACACCATC CTCACCCCCATGCTCAACCCACTCATCTACAGCTTGAGGAATAAAGATGTGGCTGCAGCT CTGAGGAAAGTACTAGGGAGATGTGGTTCCTCCCAGAGCATCAGGGTGGCGACTGTGATC AGGAAGGGC |
| Conceptual translation |
MEGLLQNSTNFVLTGLITHPAFPGLLFAVVFSIFVVAITANLVMILLIHMDSRLHTPMYF LLSQLSIMDTIYICITVPKMLQDLLSKDKTISFLGCAVQIFYLTLIGGEFFLLGLMAYDR YVAVCNPLRYPLLMNRRVCLFMVVGSWVGGSLDGFMLTPVTMSFPFCRSREINHFFCEIP AVLKLSCTDTSLYETLMYACCVLMLLIPLSVISVSYTHILLTVHRMNSAEGRRKAFATCS SHIMVVSVFYGAAFYTNVLPHSYHTPEKDKVVSAFYTILTPMLNPLIYSLRNKDVAAALR KVLGRCGSSQSIRVATVIRKG Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber, Deletion | 28 (Hasin) | |||
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 248,500,109 | 248,865,374 | CopyNumber | Variation_3340 (DGV) |
| 1 | 248,522,680 | 249,158,239 | CopyNumber | Variation_8355 (DGV) |
| 1 | 248,595,681 | 248,817,382 | CopyNumber | Variation_2359 (DGV) |
| 1 | 248,626,918 | 248,830,541 | Inversion | Variation_37092 (DGV) |
| 1 | 248,687,510 | 248,865,377 | CopyNumber | Variation_0017 (DGV) |
| 1 | 248,701,948 | 248,877,423 | CopyNumber | Variation_2056 (DGV) |
| 1 | 248,727,899 | 248,808,428 | CopyNumber | Variation_38963 (DGV) |
| 1 | 248,799,314 | 248,802,543 | CopyNumber | Variation_30468 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| G323D | % Freq | CORP | |
|---|---|---|---|
| 1 | D | 74.73 | 0.132 |
| 2 | G | 25.27 | 0.132 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2T35.aApr07-unspliced | main_exon | 3UTR | chr1 | 248,638,287 | 248,638,290 | - |
| CDS | chr1 | 248,638,290 | 248,639,258 | - | ||