OR4F4 Olfactory Receptor
| Gene Symbol | OR4F41 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | 0.14 (functional) |
| Aliases | HS14a-1-A, OR19-3, HsOR15.2.6 |
| External Ids | HGNC: 8301 GeneBank: AF270636, AF399574, BK004223 |
| Build #39 labels | OR4F4, OR4F18 |
| Chromosomal location | 15:101,922,145-101,923,059 (-) |
| Cluster | 15@102 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F17 | 99.02% | 305 |
| OR4F5 | 98.69% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F26P | 78% | 304 |
| Mouse | Or4f4-ps | 84% | 298 |
| Mouse | Or4f17-ps | 83% | 298 |
| Mouse | Or4f4b | 82% | 297 |
| Rat | Or4f4b-ps | 82% | 297 |
| Cow | OR4F69 | 65% | 293 |
| Orang | OR4F17P | 96% | 278 |
| Horse | OR4F17B | 83% | 305 |
| Horse | OR4F17 | 83% | 305 |
| Chimp | OR4F4P | 99% | 302 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AY972819 |
Sequence information
| Nucleotide sequence |
ATGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAGGAACTCCAGACCTTCCTA TTTATGTTGTTTTTTGTATTCTATGGAGGAATCGTGTTTGGAAACCTTCTTATTGTCATA ACAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTCTCA CTCATTGATCTGTCTCTGTCTTCAGTCACAGCCCCCAAGATGATTACTGACTTTTTCAGC CAGCGCAAAGTCATCTCTTTCAAGGGCTGCCTTGTTCAGATATTTCTCCTTCACTTCTTT GGTGGGAGTGAGATGGTGATCCTCATAGCCATGGGCTTTGACAGATATATAGCAATATGC AAACCCCTACACTACACTACAATTATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTC GCATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCCTTTGCCGTGCACTTACCC TTCTGTGGTCCCAATGAGGTCGATAGTTTTTATTGTGACCTTCCTAGGGTAATCAAACTT GCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGCTCACT GTGTGTTCTTTTGTTCTTCTAATCATCTCATACACTATCATCCTAATGACCATCCAGCAT TGCCCTTTAGATAAGTCGTCCAAAGCTCTGTCCACTTTGACTGCTCACATTACAGTAGTT CTTTTGTTCTTTGGACCATGTGTCTTTATTTATGCCTGGCCATTCCCCATCAAGTCATTA GATAAATTCCTTGCTGTATTTTATTCTGTGATCACCCCTCTCTTGAACCCAATTATATAC ACACTGAGGAACAAAGACATGAAGACGGCAATAAGACGGCTGAGAAAATGGGATGCACAT TCTAGTGTAAAGTTT |
| Conceptual translation |
MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLS LIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAIC KPLHYTTIMCGNACVGIMAVAWGIGFLHSVSQLAFAVHLPFCGPNEVDSFYCDLPRVIKL ACTDTYRLDIMVIANSGVLTVCSFVLLIISYTIILMTIQHCPLDKSSKALSTLTAHITVV LLFFGPCVFIYAWPFPIKSLDKFLAVFYSVITPLLNPIIYTLRNKDMKTAIRRLRKWDAH SSVKF Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 15 | 102,391,933 | 102,520,985 | CopyNumber | Variation_72386 (DGV) |
| 15 | 102,445,101 | 102,519,236 | CopyNumber | Variation_30727 (DGV) |
| 15 | 102,446,317 | 102,520,985 | CopyNumber | Variation_72385 (DGV) |
| 15 | 102,447,429 | 102,515,822 | CopyNumber | Variation_77144 (DGV) |
| 15 | 102,454,764 | 102,508,554 | CopyNumber | Variation_77146 (DGV) |
| 15 | 102,454,764 | 102,515,822 | CopyNumber | Variation_87921 (DGV) |
| 15 | 102,459,407 | 102,519,236 | CopyNumber | Variation_32067 (DGV) |
| 15 | 102,462,099 | 102,488,994 | CopyNumber | Variation_77147 (DGV) |
| 15 | 102,462,099 | 102,491,577 | CopyNumber | Variation_87920 (DGV) |
| 15 | 102,462,099 | 102,503,664 | CopyNumber | Variation_87922 (DGV) |
| 15 | 102,463,086 | 102,463,292 | Del(-14) | #23(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4F4.aApr07-unspliced | main_exon | 3UTR | chr15 | 101,922,142 | 101,922,145 | - |
| CDS | chr15 | 101,922,145 | 101,923,059 | - | ||
| 5UTR | chr15 | 101,923,059 | 101,923,116 | - | ||