OR51F2 Olfactory Receptor
| Gene Symbol | OR51F21 (View this gene in GeneCards) |
| Family | 51 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR11-23, HsOR11.3.25, ORL3391 |
| External Ids | HGNC: 15197 GeneBank: AB065529, BK004281, NM_001004753 ORDB: ORL3391 |
| Build #39 labels | OR51F2 |
| Chromosomal location | 11:4,821,422-4,822,411 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR51C4P | 61.81% | 309 |
| OR51F1 | 63.14% | 312 |
| OR51F5P | 63.14% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR51F1 | 66% | 308 |
| Mouse | Or51f2 | 84% | 315 |
| Rat | Or51f2 | 87% | 315 |
| Rat | Or51f2b | 87% | 315 |
| Cow | OR51F2CP | 87% | 313 |
| Orang | OR51F5 | 64% | 312 |
| Horse | OR51F2DP | 80% | 314 |
| Chimp | OR51F5 | 65% | 299 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136877 |
| GNF Atlas2 | gnf1h10923_at |
Sequence information
| Nucleotide sequence |
ATGTCGGTCCTCAATAATACCATTGCTGAGCCTCTGATCTTCCTCCTGATGGGCATTCCA GGCCTGAAAGCCACCCAGTACTGGATCTCCATCCCTTTTTGTCTCCTATATGTTGTTGCC GTCTCTGGAAATAGCATGATCCTGTTTGTGGTCCTCTGTGAACGGAGCCTCCATAAGCCT ATGTACTATTTCCTCTCTATGCTTTCAGCCACAGACCTGAGCTTGTCCCTGTGTACACTT TCTACTACCCTTGGTGTCTTCTGGTTTGAAGCCCGAGAAATCAACCTAAATGCCTGCATT GCCCAGATGTTCTTTCTACACGGATTTACTTTCATGGAGTCTGGGGTTCTACTGGCCATG GCCTTTGATCGTTTTGTGGCCATCTGTTACCCACTGAGATACACTACCATCCTTACCAAT GCCCGAATTGCCAAGATTGGGATGAGCATGTTGATAAGAAATGTTGCCGTCATGTTGCCA GTCATGCTCTTTGTCAAGAGGTTGTCCTTCTGCAGTTCTATGGTCCTTTCACATTCTTAC TGCTACCATGTTGATCTCATCCAACTCTCCTGCACAGACAATAGGATCAACAGCATCCTT GGTCTGTTTGCGCTTTTGTCCACTACAGGGTTTGACTGCCCTTGCATCCTGCTCTCCTAT ATCCTGATCATTCGATCTGTCCTCAGCATTGCTTCCTCAGAAGAGAGGCGGAAAGCCTTC AACACCTGCACATCCCACATCAGTGCTGTTTCCATCTTCTACCTCCCTCTCATCAGTTTG TCTCTTGTCCATCGCTATGGCCATTCAGCACCTCCATTTGTCCACATCATCATGGCCAAT GTCTTTCTGCTAATCCCTCCTGTGCTCAACCCTATTATTTACAGTGTAAAGATTAAGCAG ATTCAAAAGGCCATTATCAAGGTCTTAATTCAGAAGCACTCCAAATCTAATCATCAGCTA TTTCTGATTAGAGATAAAGCCATTTATGAA |
| Conceptual translation |
MSVLNNTIAEPLIFLLMGIPGLKATQYWISIPFCLLYVVAVSGNSMILFVVLCERSLHKP MYYFLSMLSATDLSLSLCTLSTTLGVFWFEAREINLNACIAQMFFLHGFTFMESGVLLAM AFDRFVAICYPLRYTTILTNARIAKIGMSMLIRNVAVMLPVMLFVKRLSFCSSMVLSHSY CYHVDLIQLSCTDNRINSILGLFALLSTTGFDCPCILLSYILIIRSVLSIASSEERRKAF NTCTSHISAVSIFYLPLISLSLVHRYGHSAPPFVHIIMANVFLLIPPVLNPIIYSVKIKQ IQKAIIKVLIQKHSKSNHQLFLIRDKAIYE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SYN | C/A | R/R | 1000GP (YRI, YRI) |
| 11 | 4,821,636 | 4,821,636 | NS | A/G | D/G | 1000GP (CEU) |
| 11 | 4,821,934 | 4,821,934 | SYN | C/T | C/C | 1000GP (CEU) |
| 11 | 4,822,169 | 4,822,169 | NS | G/C | V/L | 1000GP (CHBJPT) |
| 11 | 4,842,862 | 4,842,862 | NS | A/G | T/A | rs61741857 (DbSNP) |
| 11 | 4,842,866 | 4,842,866 | NS | A/G | D/G | rs35003053 (DbSNP) |
| 11 | 4,842,914 | 4,842,914 | NS | G/T | W/L | rs61743166 (DbSNP) |
| 11 | 4,842,925 | 4,842,925 | SYN | A/C | R/R | rs7114668 (DbSNP) |
| 11 | 4,843,254 | 4,843,254 | SYN | A/T | G/G | rs7103540 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 88 (Hasin) | |||
| 11 | 4,842,552 | 4,845,641 | CopyNumber | #119 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T83A | D84G | W100L | V262L | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | T | D | W | V | 91.09 | 0.075 |
| 2 | T | G | W | V | 7.91 | 0.075 |
| 3 | A | D | L | V | 0.84 | 0.075 |
| 4 | T | D | W | L | 0.15 | 0.075 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR51F2.aApr07-unspliced | main_exon | 5UTR | chr11 | 4,821,386 | 4,821,422 | + |
| CDS | chr11 | 4,821,422 | 4,822,411 | + | ||
| 3UTR | chr11 | 4,822,411 | 4,822,414 | + | ||