OR52J3 Olfactory Receptor
| Gene Symbol | OR52J31 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR11-32, HsOR11.3.43, ORL3287 |
| External Ids | HGNC: 14799 GeneBank: AB065530, BK004318, NM_001001916 ORDB: ORL3287 |
| Build #39 labels | OR52J3 |
| Chromosomal location | 11:5,046,526-5,047,458 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52J2P | 84.62% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52J3C | 89% | 312 |
| Mouse | Or52j3 | 82% | 309 |
| Rat | Or52j3b | 82% | 307 |
| Rat | Or52j3 | 82% | 307 |
| Cow | OR52J3DP | 87% | 311 |
| Orang | OR52J2 | 87% | 303 |
| Horse | OR52J3G | 86% | 311 |
| Horse | OR52J3E | 85% | 311 |
| Horse | OR52J3F | 86% | 302 |
| Chimp | OR52J2P | 87% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10943_at |
Sequence information
| Nucleotide sequence |
ATGTTTTATCACAACAAGAGCATATTTCACCCAGTCACATTTTTCCTCATTGGAATCCCA GGTCTGGAAGACTTCCACATGTGGATCTCCGGGCCTTTCTGCTCTGTTTACCTTGTGGCT TTGCTGGGCAATGCCACCATTCTGCTAGTCATCAAGGTAGAACAGACTCTCCGGGAGCCC ATGTTCTACTTCCTGGCCATTCTTTCCACTATTGATTTGGCCCTTTCTACAACCTCTGTG CCTCGCATGCTGGGTATCTTCTGGTTTGATGCTCACGAGATTAACTATGGAGCTTGTGTG GCCCAGATGTTTCTGATCCATGCCTTCACTGGCATGGAGGCTGAGGTCTTACTGGCTATG GCTTTTGACCGTTATGTGGCCGTCTGTGCTCCACTACATTACGCAACCATCTTGACATCC CAAGTGTTGGTGGGCATTAGCATGTGCATTGTAATTCGTCCCGTTTTACTTACACTTCCC ATGGTCTATCTTATCTACCGCCTACCCTTTTGTCAGGCTCACATAATAGCCCATTCCTAC TGTGAGCACATGGGCATTGCAAAATTGTCCTGTGGAAACATTCGTATCAATGGTATCTAT GGGCTTTTTGTAGTTTCTTTCTTTGTTCTGAACCTGGTGCTCATTGGCATCTCGTATGTT TACATTCTCCGTGCTGTCTTCCGCCTCCCATCACATGATGCTCAGCTAAAAGCCCTAAGC ACGTGTGGCGCTCATGTTGGAGTCATCTGTGTTTTCTATATCCCTTCAGTCTTCTCTTTC CTTACTCATCGATTTGGACACCAAATACCAGGTTACATTCACATTCTTGTTGCCAATCTC TATTTGATTATCCCACCCTCTCTCAACCCCATCATTTATGGGGTGAGGACCAAACAGATT CGAGAACGAGTGCTCTATGTTTTTACTAAAAAA |
| Conceptual translation |
MFYHNKSIFHPVTFFLIGIPGLEDFHMWISGPFCSVYLVALLGNATILLVIKVEQTLREP MFYFLAILSTIDLALSTTSVPRMLGIFWFDAHEINYGACVAQMFLIHAFTGMEAEVLLAM AFDRYVAVCAPLHYATILTSQVLVGISMCIVIRPVLLTLPMVYLIYRLPFCQAHIIAHSY CEHMGIAKLSCGNIRINGIYGLFVVSFFVLNLVLIGISYVYILRAVFRLPSHDAQLKALS TCGAHVGVICVFYIPSVFSFLTHRFGHQIPGYIHILVANLYLIIPPSLNPIIYGVRTKQI RERVLYVFTKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,068,662 | 5,068,662 | nonsense SNP | C/T | R/* | rs57026471 (DbSNP) |
| 11 | 5,068,388 | 5,068,388 | NS | A/C | K/N | rs61995688 (DbSNP) |
| 11 | 5,067,984 | 5,067,984 | NS | A/G | T/A | rs2500016 (DbSNP) |
| 11 | 5,068,665 | 5,068,665 | NS | A/G | M/V | rs61747651 (DbSNP) |
| 11 | 5,068,137 | 5,068,137 | NS | A/G | I/V | rs2500017 (DbSNP) |
| 11 | 5,068,431 | 5,068,431 | NS | A/G | I/V | rs17350764 (DbSNP) |
| 11 | 5,068,297 | 5,068,297 | NS | A/G | Y/C | rs58664826 (DbSNP) |
| 11 | 5,068,177 | 5,068,177 | NS | A/T | Q/L | rs2500018 (DbSNP) |
| 11 | 5,068,477 | 5,068,477 | NS | C/T | T/M | rs61731854 (DbSNP) |
| 11 | 5,068,661 | 5,068,661 | SYN | A/G | E/E | rs2500019 (DbSNP) |
| 11 | 5,047,432 | 5,047,432 | nonsense SNP | C/T | R/* | 1000GP (CEU, CHBJPT) |
| 11 | 5,046,754 | 5,046,754 | NS | A/G | T/A | 1000GP (CEU, CHBJPT) |
| 11 | 5,047,431 | 5,047,431 | SYN | A/G | E/E | 1000GP (CEU, CHBJPT) |
| 11 | 5,046,907 | 5,046,907 | NS | G/A | V/I | 1000GP (CEU, CHBJPT) |
| 11 | 5,047,201 | 5,047,201 | NS | G/A | V/I | 1000GP (CEU, CHBJPT) |
| 11 | 5,046,947 | 5,046,947 | NS | A/T | Q/L | 1000GP (CEU, CHBJPT) |
| 11 | 5,047,067 | 5,047,067 | NS | G/A | C/Y | 1000GP (CEU, CHBJPT) |
| 11 | 100 | -100 | NS | A/G | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | A/G | E/E | 1000GP (YRI) |
| 11 | 100 | -100 | nonsense SNP | C/T | R/* | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,907,893 | 5,135,331 | CopyNumber | Variation_3835 (DGV) |
| 11 | 5,066,087 | 5,073,101 | CopyNumber | Variation_48810 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T77A | V128I | Q141L | C181Y | N211K | V226I | R303* | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | T | V | Q | C | N | V | R | 53.38 | 0.146 |
| 2 | A | I | L | C | N | V | R | 26.04 | 0.017 |
| 3 | A | I | L | Y | N | I | * | 9.75 | 1.200 |
| 4 | A | I | L | C | N | I | R | 7.60 | 0.056 |
| 5 | A | I | L | C | N | I | * | 0.84 | 1.200 |
| 6 | A | I | L | Y | N | I | R | 0.69 | 0.200 |
| 7 | A | I | L | C | K | I | * | 0.54 | 1.200 |
| 8 | T | I | L | C | N | V | R | 0.38 | 0.017 |
| 9 | A | V | Q | C | N | V | R | 0.38 | 0.146 |
| 10 | T | V | Q | Y | N | V | R | 0.08 | 0.421 |
| 11 | A | I | L | Y | K | I | * | 0.08 | 1.200 |
| 12 | T | V | L | C | N | V | R | 0.08 | 0.146 |
| 13 | A | I | Q | C | N | V | R | 0.08 | 0.017 |
| 14 | T | V | Q | C | N | I | R | 0.08 | 0.366 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR52J3.aApr07-unspliced | main_exon | CDS | chr11 | 5,046,526 | 5,047,458 | + |
| 3UTR | chr11 | 5,047,458 | 5,047,461 | + | ||