OR5AC4P Olfactory Receptor
| Gene Symbol | OR5AC4P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AC |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR3.3.3P |
| External Ids | HGNC: 31284 GeneBank: NG_004426 |
| Build #39 labels | |
| Chromosomal location | 3:98,104,754-98,105,669 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AC1P | 75.74% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AC26 | 79% | 303 |
| Mouse | Or5ac16 | 72% | 299 |
| Rat | Or5ac16 | 71% | 299 |
| Cow | OR5AC26 | 80% | 306 |
| Orang | OR5AC1 | 76% | 305 |
| Horse | OR5AC34 | 78% | 306 |
| Chimp | OR5AC1 | 75% | 305 |
Sequence information
| Nucleotide sequence |
ATGGAAACAAATAAGACACAGATTATGAACTCCGTCCTCCAAGGACTTACAGATCTTCTA GAGCTGCAGGCGCCCTTGTTCCTGGTGTTCCTGGTGATCTACCTTATCACCACGGTGGGC AACCGTGGCCTGATGGCTCTCATCTGGAAGGATCCCCACTTTCACACCCCCATGTGCTTA TCCCTCGGCAGTTTAGCCTTTGCAGATGCATGCACTTCATCTTCTGTGACTCCCAAGATG TTCGTACATTTTTTATCTAAGAATCATATGATATCCCTGGTTGGGTGCATGATCCAGTTT TATATTTTTGCTTCCGGTGCAAACACAGGAAGTTTCCTCCTGGTAGTGATGGCCTATGAC TGTTATATGGCCATATGTAACCCTTTGCTTTATCCTCTAGTGATGTCCAATACCTTCTGC ATTCAATTATCAGGTGTTTCATTTATTATTGTTTTTTTCATCCTATAACGCATGTGGGTT TGTTATTTCAATTAACTTTCTGCAAGTCCAATGTAATACATTATTTCTACTGTGATATTT TACAACTGTTTAAAATTTCCTGTACTGACCCTGGAGTAATATGCTCCTGGTTTTTGTATT TTCAGTCTTTATACAATCTTTCACTTTTATGACTATCATCGTCTCTTACTCCTATGTCCT CTTGGCCATCCTGAAAAAGAAGTCTGAGAAGGGTAGAAGGAAAGCTTTCTCCACTTGCAG TGCCCATCTGCTTTCTGTCTCTTTGTTCTATGGCACTCTCTTCTTCATGTATGTGTGTCC TGGGTCTGGATCAGCTGCAGATCAGGACAAAATATATTCTTTATTTTACATGATAATAAT TCCTCTGGTAAATCCTTTTATTTACAGTCTGAGGAATAAAGAGGTCATAGGTGCATTGAA GAGAATAATAAATAAA |
| Conceptual translation |
METNKTQIMNSVLQGLTDLLELQAPLFLVFLVIYLITTVGNRGLMALIWKDPHFHTPMCL SLGSLAFADACTSSSVTPKMFVHFLSKNHMISLVGCMIQFYIFASGANTGSFLLVVMAYD CYMAICNPLLYPLVMSNTFCIQLSGVSFII/FFHPITHVGLLFQLTFCKSNVIHYFYCD ILQLFKISCTDPG/NMLLVFVFSVFIQSFTFMTIIVSYSYVLLAILKKKSEKGRRKAFS TCSAHLLSVSLFYGTLFFMYVCPGSGSAADQDKIYSLFYMIIIPLVNPFIYSLRNKEVIG ALKRIINK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,824,242 | 97,824,241 | Ins(1) | -/T | rs71760189 (DbSNP) | |
| 3 | 97,824,238 | 97,824,238 | SNP | A/G | rs72922074 (DbSNP) | |
| 3 | 97,823,926 | 97,823,926 | SNP | A/G | rs6786563 (DbSNP) | |
| 3 | 97,823,631 | 97,823,631 | SNP | A/G | rs58138872 (DbSNP) | |
| 3 | 97,823,838 | 97,823,838 | SNP | C/T | rs6775533 (DbSNP) | |
| 3 | 97,824,348 | 97,824,348 | SNP | C/T | rs9860633 (DbSNP) | |
| 3 | 97,824,080 | 97,824,080 | SNP | C/T | rs13074218 (DbSNP) | |
| 3 | 97,824,181 | 97,824,181 | SNP | C/T | rs9836845 (DbSNP) | |
| 3 | 98,104,841 | 98,104,841 | SNP | T/C | 1000GP (CEU) | |
| 3 | 98,104,877 | 98,104,877 | SNP | C/T | 1000GP (CEU) | |
| 3 | 98,104,994 | 98,104,994 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,105,082 | 98,105,082 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,105,337 | 98,105,337 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,105,394 | 98,105,394 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,105,504 | 98,105,504 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.