OR5D15P Olfactory Receptor
| Gene Symbol | OR5D15P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-145, OR11-149, HsOR11.11.26P, ORL3543 |
| External Ids | HGNC: 15282 GeneBank: BK004691, BK004706, NG_004195 ORDB: ORL3543 |
| Build #39 labels | OR5D15P |
| Chromosomal location | 11:55,786,965-55,787,906 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5D13 | 72.96% | 307 |
| OR5D2P | 75.08% | 301 |
| OR5D3P | 77.41% | 301 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5D15 | 86% | 314 |
| Mouse | Or5d3-ps | 75% | 308 |
| Rat | Or5d45-ps | 69% | 301 |
| Cow | OR5D63P | 78% | 305 |
| Orang | OR8D4 | 49% | 306 |
| Horse | OR5D15BP | 81% | 314 |
| Chimp | OR5D2P | 76% | 303 |
Sequence information
| Nucleotide sequence |
ATGTCATTAGCTGAAGGAAATCAGAGTTCTGGAGCCGTATTTACCCTCTTGGGCTTCTCA GAATATGCAGACCTCCAGGTTCCTCTGTTCCTGGTCTTCCTGACCATCTACACAATCACT GTATTGGGAAACCTGGGCATGATCATGATCATCAGGATCAACCCCAAACTCCACACCCGC ATGTACTTTTTCCTCAGCCACTTGTCCTTTGTTGATTTCTGTTATTCCACCACAGTTACA CCCAAACTGCTGGAGAACTTGGTTGTGGAAGACAGAACCATCTCCTTCACAGGATGCATC ATGCAATTCTTCCTGGCGTGTATATGTGCAGTGGCAGAAACATTCATGCTGGCAGTGATG GCCTATGATTGATACGTGGCGGTGTGTAACCCTTTGCTCTACACAGTTGTCAGGTCCCAG AAACTCTGTGCATCATTAGTGGCAGGGCCCTACACATGGGGTATAATCTCTTCTCTGACA CTCACCTATTTCCTCTTGTCATTATCCTTCTGTGGGTCTAACATCATCAATAATTTTGTC TGTGAGCACTCTGTCATCATCTCTGTCTCCTGCTCTGACCCCTACATCAGCCAAATGCTT TGTTTTGTCATTGCAATATTCAATGAGGTGAGCAGCTTGGGAGTCATCCTCACTACCTAT ATTTTCATCTTTATTGCTGTCATAAAAATGCCTTCTGCTGTTGGGCACCAAAAAGCTTTC TCTACCTGTGCTTCCCACCTGACTGCCATCACTATTTTCCACGGGACTGTCCTGTTCCTT TATTGTGTACCCAACTCCAAAAACTCATGGCTCATAGTCAAAGTAGGTTCTGTGTTTTAT ACAGTCATCATCCCCACATTGAACCCTTTAACCTACAGCCTCAGGAACAAAGACGTGAAA GAGAGTGTTCGAAAGTTAATGAATCACTCAATACAATTTTGT |
| Conceptual translation |
MSLAEGNQSSGAVFTLLGFSEYADLQVPLFLVFLTIYTITVLGNLGMIMIIRINPKLHTR MYFFLSHLSFVDFCYSTTVTPKLLENLVVEDRTISFTGCIMQFFLACICAVAETFMLAVM AYDXVAVCNPLLYTVVRSQKLCASLVAGPYTWGIISSLTLTYFLLSLSFCGSNIINNFV CEHSVIISVSCSDPYISQMLCFVIAIFNEVSSLGVILTTYIFIFIAVIKMPSAVGHQKAF STCASHLTAITIFHGTVLFLYCVPNSKNSWLIVKVGSVFYTVIIPTLNPLTYSLRNKDVK ESVRKLMNHSIQFC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,554,778 | 55,554,777 | Ins(1) | -/A | rs34284927 (DbSNP) | |
| 11 | 55,555,298 | 55,555,298 | SNP | A/G | rs297110 (DbSNP) | |
| 11 | 55,554,821 | 55,554,821 | SNP | A/G | rs297109 (DbSNP) | |
| 11 | 55,555,211 | 55,555,211 | SNP | C/T | rs10897258 (DbSNP) | |
| 11 | 55,787,345 | 55,787,345 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 55,787,735 | 55,787,735 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 55,787,822 | 55,787,822 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,475,356 | 55,563,900 | CopyNumber | Variation_1244 (DGV) |
| 11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
| 11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
| 11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
| 11 | 55,422,586 | 55,596,313 | CopyNumber | Variation_10360 (DGV) |
| 11 | 55,422,585 | 55,596,313 | CopyNumber | Variation_29911 (DGV) |
| 11 | 55,463,782 | 55,584,109 | CopyNumber | Variation_48056 (DGV) |
| 11 | 55,437,126 | 55,596,313 | CopyNumber | Variation_48840 (DGV) |
| 11 | 55,442,368 | 55,596,313 | CopyNumber | Variation_48841 (DGV) |
| 11 | 55,444,868 | 55,591,047 | CopyNumber | Variation_48842 (DGV) |
| 11 | 55,444,868 | 55,596,313 | CopyNumber | Variation_48843 (DGV) |
| 11 | 55,447,427 | 55,596,313 | CopyNumber | Variation_53429 (DGV) |
| 11 | 55,422,345 | 55,603,590 | CopyNumber | Variation_65956 (DGV) |
| 11 | 55,523,241 | 55,558,796 | CopyNumber | Variation_85784 (DGV) |
| 11 | 55,554,341 | 55,557,382 | Deletion | #288 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.