OR5K1 Olfactory Receptor
| Gene Symbol | OR5K11 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | K |
| Pseudogene | No |
| CORP pseudogene probability score | 0.09 (functional) |
| Aliases | HSHTPCRX10, OR3-8, HsOR3.3.16, ORL43 |
| External Ids | HGNC: 8349 GeneBank: AB065458, BK004416, HSHTPRX10, NM_001004736 ORDB: ORL43 |
| Build #39 labels | OR5K1 |
| Chromosomal location | 3:98,469,577-98,470,500 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5K2 | 94.79% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5K4 | 75% | 305 |
| Mouse | Or5k1 | 85% | 308 |
| Rat | Or5k1-ps | 86% | 308 |
| Cow | OR5K22P | 76% | 308 |
| Orang | OR5K2 | 94% | 307 |
| Horse | OR5K1P | 85% | 289 |
| Chimp | OR5K2P | 93% | 307 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | X64984 |
| GNF Atlas2 | gnf1h10536_at |
Sequence information
| Nucleotide sequence |
ATGGCTGAAGAAAATCATACCATGAAAAATGAGTTTATCCTCACAGGATTTACAGATCAC CCTGAGCTGAAGACTCTGCTGTTTGTGGTGTTCTTTGCCATCTATCTGATCACCGTGGTG GGGAATATTAGTTTGGTGGCACTGATATTTACACACCGTCGGCTTCACACACCAATGTAC ATCTTTCTGGGAAATCTGGCTCTTGTGGATTCTTGCTGTGCCTGTGCTATTACCCCCAAA ATGTTAGAGAACTTCTTTTCTGAGAACAAAAGGATTTCCCTCTATGAATGTGCAGTACAG TTTTATTTTCTTTGCACTGTGGAAACTGCAGACTGCTTTCTTCTGGCAGCAATGGCCTAT GACCGCTATGTGGCCATATGCAACCCACTGCAGTACCACATCATGATGTCCAAGAAACTC TGCATTCAGATGACCACAGGGGCCTTCATAGCTGGAAACCTGCATTCCATGATTCATGTA GGGCTTGTATTTAGGTTAGTTTTCTGTGGATCGAATCACATCAACCACTTTTACTGTGAT ATTCTTCCCTTGTATAGACTCTCTTGTGTTGATCCTTATATCAATGAACTGGTTCTATTC ATCTTCTCAGGTTCAGTTCAAGTCTTTACCATAGGTAGTGTCTTAATATCTTATCTCTAT ATTCTTCTTACTATTTTCAAAATGAAATCCAAAGAGGGAAGGGCCAAAGCTTTTTCTACC TGTGCATCCCACTTTTTGTCAGTTTCATTATTCTATGGATCTCTTTTCTTCATGTACGTT AGACCAAATTTGCTTGAAGAAGGGGATAAAGATATACCAGCTGCAATTTTATTTACAATA GTAGTTCCCTTACTAAATCCTTTCATTTATAGCCTGAGAAATAGGGAAGTAATAAGTGTC TTAAGAAAAATTCTGATGAAGAAA |
| Conceptual translation |
MAEENHTMKNEFILTGFTDHPELKTLLFVVFFAIYLITVVGNISLVALIFTHRRLHTPMY IFLGNLALVDSCCACAITPKMLENFFSENKRISLYECAVQFYFLCTVETADCFLLAAMAY DRYVAICNPLQYHIMMSKKLCIQMTTGAFIAGNLHSMIHVGLVFRLVFCGSNHINHFYCD ILPLYRLSCVDPYINELVLFIFSGSVQVFTIGSVLISYLYILLTIFKMKSKEGRAKAFST CASHFLSVSLFYGSLFFMYVRPNLLEEGDKDIPAAILFTIVVPLLNPFIYSLRNREVISV LRKILMKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 98,188,616 | 98,188,615 | Ins(1) | -/G | rs34478238 (DbSNP) | |
| 3 | 98,189,074 | 98,189,074 | nonsense SNP | A/T | */Y | rs73140291 (DbSNP) |
| 3 | 98,188,577 | 98,188,577 | NS | C/T | R/C | rs62619937 (DbSNP) |
| 3 | 100 | -100 | SYN | C/T | A/A | 1000GP (YRI) |
| 3 | 100 | -100 | NS | T/C | V/A | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| Q143R | V198I | V282A | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | Q | V | V | 98.69 | 0.144 |
| 2 | Q | V | A | 0.77 | 0.144 |
| 3 | R | V | V | 0.46 | 0.144 |
| 4 | Q | I | V | 0.08 | 0.144 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5K1.aApr07-unspliced | main_exon | CDS | chr3 | 98,469,577 | 98,470,500 | + |
| 3UTR | chr3 | 98,470,500 | 98,470,528 | + | ||