OR5M12P Olfactory Receptor
| Gene Symbol | OR5M12P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-204, HsOR11.11.82P, ORL3559 |
| External Ids | HGNC: 15292 GeneBank: BK004601, NG_004190 ORDB: ORL3559 |
| Build #39 labels | OR5M12P |
| Chromosomal location | 11:56,628,932-56,629,899 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M11 | 61.33% | 300 |
| OR5M13P | 62.21% | 307 |
| OR5M5P | 62.3% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5M12 | 84% | 326 |
| Mouse | Or5m12 | 87% | 317 |
| Rat | Or5m12b-ps | 87% | 311 |
| Rat | Or5m12-ps | 87% | 311 |
| Cow | OR5M12 | 83% | 294 |
| Orang | OR5E1P | 52% | 303 |
| Horse | OR5M12 | 84% | 279 |
| Chimp | OR5M13 | 63% | 307 |
Sequence information
| Nucleotide sequence |
ATGAAGATAGATCCCAAATGCAATGGCACGGAGGTAACTGAATTTATTCTGTTGGGACTG ACTAGCCAGCCAGAGCTGCAGCCTATGCTCTTTGTGGTATTCCTCCTGATTTACCTCATC ACCCTGACTGGGAAATTTGGGATGATTTTCCTAATCAGATTCACTCCTCAGCTCCAAACC CACATGTATTTTTTCCTTACTCATTTAGCATGTGTGGATATTTTTTACTCCACTAATGTC TCTCCACAGAGCTTGTTAATTTCTTATCTGAGAAGAAGACCATTTCCTACGCTGGGTGTC TGGCCCAGTGTTTTGTCTTTGTGACTCTGCTCCTTACTGAGTATTACATGCTTGGTGCCA TGGCCTATGACTGCTACATGGCAATCTGCAATCCCCTACATTACAGCAGCAAAATGTCCA GAGCAGTTTGCATCTGCCTGGTGACTTTCCCCTACTTCTGGGGTTCTATGGTGGGCACGA TGCAAGTAATACTGACCTCTCGTTTGTCCTTTTTTGGACCCAACACCATCAACCATTTCT ACTGTACTGACCCACCCCTCTTAATGTTGACATCTTCTGACACTTACATAAAACAAACTG CCTTGTTTGTGTCAGCAGGGATTAACCTCACAGTTTCCCTGCTCATCATTCTCATCTCCT ACATTTTCATTTTCATCACCATTATGAGGATCCGTTCCAGTGAAGGGCAGCTCAAAGCCT TCTCCACCTGTGGCTCCCACCTGACAGCTGTCACTATGTTCTATGGGTCCCTATTCTGCA TGTACCTGAGACCAACAAATGAGCTGTCTGTTGAGCAAGGGAAAATGGGAGTGGTGTTTT GTATTTTTGTGAGTCCCATGCTGAACCCGTTTATCTACCGCCTGAGAAACAAGGATGTGA AACAGGCCTTGAAAAGAGTGTTTATGAGAAACCTTGGTAAGACGAAGAAAAATTCAGTAA CTACAGTT |
| Conceptual translation |
MKIDPKCNGTEVTEFILLGLTSQPELQPMLFVVFLLIYLITLTGKFGMIFLIRFTPQLQT HMYFFLTHLACVDIFYSTNVSP/ELVNFLSEKKTISYAGCLAQCFVFVTLLLTEYYMLG AMAYDCYMAICNPLHYSSKMSRAVCICLVTFPYFWGSMVGTMQVILTSRLSFFGPNTINH FYCTDPPLLMLTSSDTYIKQTALFVSAGINLTVSLLIILISYIFIFITIMRIRSSEGQLK AFSTCGSHLTAVTMFYGSLFCMYLRPTNELSVEQGKMGVVFCIFVSPMLNPFIYRLRNKD VKQALKRVFMRNLGKTKKNSVTTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,397,339 | 56,397,339 | SNP | A/C | rs61745712 (DbSNP) | |
| 11 | 56,397,351 | 56,397,351 | SNP | A/G | rs17548582 (DbSNP) | |
| 11 | 56,397,276 | 56,397,276 | SNP | A/G | rs17150928 (DbSNP) | |
| 11 | 56,396,785 | 56,396,785 | SNP | A/G | rs61742266 (DbSNP) | |
| 11 | 56,396,516 | 56,396,516 | SNP | A/G | rs34154656 (DbSNP) | |
| 11 | 56,396,573 | 56,396,573 | SNP | C/G | rs61903301 (DbSNP) | |
| 11 | 56,396,858 | 56,396,858 | SNP | C/T | rs61744707 (DbSNP) | |
| 11 | 56,397,233 | 56,397,233 | SNP | C/T | rs61742058 (DbSNP) | |
| 11 | 56,396,872 | 56,396,872 | SNP | C/T | rs61903303 (DbSNP) | |
| 11 | 56,396,870 | 56,396,870 | SNP | G/T | rs61903302 (DbSNP) | |
| 11 | 56,629,040 | 56,629,040 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,629,097 | 56,629,097 | SNP | C/G | 1000GP (CEU) | |
| 11 | 56,629,157 | 56,629,157 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,629,309 | 56,629,309 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,629,875 | 56,629,875 | SNP | G/A | 1000GP (CEU) | |
| 11 | 56,629,285 | 56,629,285 | SNP | G/T | 1000GP (CHBJPT) | |
| 11 | 56,629,286 | 56,629,286 | SNP | G/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 100 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.