OR6E1P Olfactory Receptor
| Gene Symbol | OR6E1P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR14.3.2P, ORL3703 |
| External Ids | HGNC: 14739 GeneBank: AF399346, NG_002244 ORDB: ORL3703 |
| Build #39 labels | OR6E1P |
| Chromosomal location | 14:22,702,143-22,703,068 (+) |
| Cluster | 14@23 |
| Synteny | CLIC#36 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2AP1 | 53.9% | 308 |
| OR6C3 | 52.94% | 306 |
| OR6C4 | 53.25% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6E1 | 84% | 308 |
| Mouse | Or6e1 | 80% | 306 |
| Rat | Or6e1 | 78% | 309 |
| Cow | OR6E1 | 84% | 307 |
| Cow | OR6E1B | 84% | 306 |
| Cow | OR6E1C | 83% | 306 |
| Cow | OR6E1D | 82% | 307 |
| Orang | OR6C7P | 52% | 308 |
| Horse | OR6E1 | 86% | 309 |
| Horse | OR6E1F | 86% | 309 |
| Chimp | OR6C8 | 54% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF363311 |
Sequence information
| Nucleotide sequence |
ATGGGGAACCACACCACCGTCACCGAGTTTGTCCTGCTGGGGCTCTCAGAGACCTGTGAG CTGCAGATGCTCATCTTCCTGGGGCTCCTCCTGACCTACCTCCTCACACTGCTGGGGAAT CTGGTCATCGTGGTCATCACCCTCATGGACAGGCGCCTCCACACCACCATGTACTACTTC CTCCGCAACTTTGCTGTCCCGGAGATCTGGTTCACCTCGGTCATCTTTCCCAAGGTGCTG GCCAACATCCTCACAGGATACAAGACCATTCCCTCCCAGGCTGCTTCCTGCAAAGTTTGC TCTATTTTTTCTTGGGCACCACAGAGTTCTTCCTCCTGGCGGTGATGTCCTTTGACAGGT ACGTGGCCGTATGTAACCCTTTGCATTATGCCACCATCATGAGCAAAAGGGTCTGTGTCC AGCTAGTCCTCTGTTAGTGGATGACAGGATTCCTTCTCATCATTATTCCAAGTTTTCTTG TCCTTCAGCAGCCATTCTGTGGCCCCAACATCATTAACCATTTCTTCTGTGACAACTTTC CCCTCTTGAAACTCATTTGTGCAGACATGACTCTGATAGAGCTCCTGGGTTTTGTTATAG CCAACGTCAGCTTACTGGGCACTCTGTCTATGACGGCCACTTGCTATGGCCACATCCTCC ACGCCATTCTGCACATCCCCTCAGCCAAAGAGAAGCAGAAAGCCTTCTCCGCCTGCTCCT CCCACATCATTGTCGTGTCTCTCTTCTATGGCAGCTGCATCTTCATGTACATTCAGTCAG GCAAGAGTGACCAGAAGGAAGACAGGAACAAGGTGGCGGCATTGCTTAACACCGTGGTGA CCCTGATGCTCAACCCCTTCATCTACACCCTGAGGAACAAACAGGTGAAACAGGTGTTTA GGCAGCAGGTGAGCAAACTCCTCATA |
| Conceptual translation |
MGNHTTVTEFVLLGLSETCELQMLIFLGLLLTYLLTLLGNLVIVVITLMDRRLHTTMYYF LRNFAVPEIWFTSVIFPKVLANILTGYKT/SLPGCFLQSLLYFFLGTTEFFLLAVMSFD RYVAVCNPLHYATIMSKRVCVQLVLCXMTGFLLIIIPSFLVLQQPFCGPNIINHFFCDN FPLLKLICADMTLIELLGFVIANVSLLGTLSMTATCYGHILHAILHIPSAKEKQKAFSAC SSHIIVVSLFYGSCIFMYIQSGKSDQKEDRNKVAALLNTVVTLMLNPFIYTLRNKQVKQV FRQQVSKLLI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 14 | 22,702,410 | 22,702,410 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 14 | 22,702,959 | 22,702,959 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 14 | 22,703,045 | 22,703,045 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 14 | 22,703,053 | 22,703,053 | SNP | G/A | 1000GP (CHBJPT) | |
| 14 | 23,171,569 | 23,171,569 | SNP | C/T | rs73589355 (DbSNP) | |
| 14 | 23,171,619 | 23,171,619 | SNP | A/G | rs10136922 (DbSNP) | |
| 14 | 23,172,160 | 23,172,160 | SNP | A/C | rs11157751 (DbSNP) | |
| 14 | 23,172,168 | 23,172,168 | SNP | C/T | rs7159259 (DbSNP) | |
| 14 | 23,172,254 | 23,172,254 | SNP | C/G | rs4981432 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 23,160,194 | 23,259,699 | CopyNumber | Variation_49325 (DGV) |
| 14 | 23,171,252 | 23,174,277 | CopyNumber | #91 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR6E1P.aApr07-unspliced | main_exon | CDS_partial | chr14 | 22,702,356 | 22,702,581 | + |