OR7E19P Olfactory Receptor
| Gene Symbol | OR7E19P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR19-7, HSCIT-B-440L2, TPCR110, HsOR19.2.16P, ORL205, ORL3779 |
| External Ids | HGNC: 8390 GeneBank: AF399426, HSTPCR110, NG_002356 ORDB: ORL205, ORL3779 |
| Build #39 labels | OR7E19P |
| Chromosomal location | 19:9,265,393-9,266,369 (-) |
| Cluster | 19@9b |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E108P | 77.06% | 327 |
| OR7E116P | 78.29% | 327 |
| OR7E22P | 77.68% | 327 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 73% | 328 |
| Mouse | Or7e178 | 70% | 308 |
| Rat | Or7e173 | 68% | 308 |
| Cow | OR7E186 | 69% | 328 |
| Orang | OR7E100P | 80% | 313 |
| Horse | OR7E225 | 71% | 316 |
| Chimp | OR7E5P | 76% | 317 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB337981 |
| mRNA | X89668 |
| GNF Atlas2 | 216536_at |
Sequence information
| Nucleotide sequence |
ATTTATGTCTTTTATTTTTTCAACCCTCTTTTCTTCTCAAGGTGTCCAAGTTACACAGAC TCGCAGAATCTCACAGGTGTCTTAGAATTTCTCTTCCTGGGACTCTCAGAGGATCCAGAA CTGCAGCCCGTCCTCGTTGGGCTGTTCCTGTCCATGTACCTGATCACGGTGCTGGGGAAC CTGCTCATCATCCTGGCCGTCAGCTGTGACTCCCACCTCCACACCCCCATGTACTTCTTC CTCTCCAACTTGTCCTTGGCTGACATCGGACTCACCTCTGCCACCATCCCTAAGATGATT GTTGATATGCAATCTCACAGCAGAATCATCTCCTATGAGGGCTGCCTGATGCAGATGTCT TTATCTATTTTGTGTGTATGAATGACATGGTCCTGACTGTGATGGCCTATGACCAGTTTG TGGCCATTTGTCACCCCCTACGCTACCCAGTCATCATGAATCCCCATCTCTGTGTCTTCT TAGTTTTGGTGTCTTTTATTCTTAGCCTGTTGAACTCCCAGCTGCACAATCAGATTGTGT TACAATTCACCTGCTTCAAGAATGTGGAAATCTTTAATTTTTTCTGTGAGCCATCTCAAC TTCTCAACCTTGCCTGTTCTGACAGTGTCATCAATAACATATTCATGTATTTAGATAGTG TTATATTTGGTTTTCTTCCCATCTCAGGGATCCTTTTGTCTTACTATAAAATTGTCTCCT CCATTCTAAGAATTCCATCATCAGATGGGAAGTATAAAGCCTTCTCCACATGTGGCTCTC ACCTGGCAGTTGTTTGCTTATTTTATGGAACAGGACTTGGAGCCTACCTCAGTTCAGCTG CGTCCTCTTTCCCCAGGAAGGGTGCGGTCACCTCAGTGATGTACACTGTGGTCATCCCTA TGCTGAACCCCTTCATCTACAGCCTGAGAAACAGGGACATTAAAAGTGCCCTGTGGAGGC TGCACAGCAGAACAGTC |
| Conceptual translation |
IYVFYFFNPLFFSRCPSYTDSQNLTGVLEFLFLGLSEDPELQPVLVGLFLSMYLITVLGN LLIILAVSCDSHLHTPMYFFLSNLSLADIGLTSATIPKMIVDMQSHSRIISYEGCLMQM/br/>SFIYFVCMNDMVLTVMAYDQFVAICHPLRYPVIMNPHLCVFLVLVSFILSLLNSQLHNQI VLQFTCFKNVEIFNFFCEPSQLLNLACSDSVINNIFMYLDSVIFGFLPISGILLSYYKIV SSILRIPSSDGKYKAFSTCGSHLAVVCLFYGTGLGAYLSSAASSFPRKGAVTSVMYTVVI PMLNPFIYSLRNRDIKSALWRLHSRTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 100 | -100 | SNP | C/T | 1000GP (YRI) | |
| 19 | 9,376,999 | 9,376,999 | SNP | G/T | rs12151250 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| 7tm_1.3.aApr07 | main_exon | CDS_partial | chr19 | 9,265,896 | 9,266,328 | - |
| exon_5UTR | chr19 | 9,269,796 | 9,270,331 | - | ||
| OR7E19P.aApr07-unspliced | main_exon | CDS_partial | chr19 | 9,265,474 | 9,265,945 | - |