OR7E24 Olfactory Receptor
Gene Symbol | OR7E241 (View this gene in GeneCards) |
Family | 7 |
Subfamily | E |
Pseudogene | No |
CORP pseudogene probability score | |
Aliases | CIT-B-440L2, OR19-8, OR19-14, HsOR19.2.14 |
External Ids | HGNC: 8396 GeneBank: AF399400, BK004227, HSHT2, NR_002146 |
Build #39 labels | OR7E24P |
Chromosomal location | 19:9,251,044-9,252,060 (+) |
Cluster | 19@9b |
Synteny | CLIC#0 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR7E100P | 75.96% | 337 |
OR7E19P | 75.69% | 325 |
OR7E25P | 79.82% | 327 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR7E153 | 79% | 313 |
Mouse | Or7e178 | 75% | 308 |
Rat | Or7e173 | 69% | 308 |
Cow | OR7E186 | 73% | 330 |
Orang | OR7E24P | 94% | 320 |
Horse | OR7E225 | 75% | 319 |
Chimp | OR7E25P | 82% | 313 |
Expression evidences
Source | Accession |
---|---|
ESTs | BX279722 |
mRNA | Y10529 |
GNF Atlas2 | 215463_at |
Sequence information
Nucleotide sequence |
ATGTCCTATTTTCCAATTCTCTTTTTTTTTTTCCTCAAAAGGTGTCCGAGCTACACAGAG CCACAGAATCTCACAGGTGTCTCAGAATTCCTCCTCCTGGGACTCTCAGAGGATCCAGAA CTGCAGCCGGTCCTCGCTGGGCTGTTCCTGTCCATGTACCTGGTCACGGTGCTGGGGAAC CTGCTCATCATCCTGGCTGTCAGCTCTGACTCCCACCTCCACACCCCCATGTACTTCTTC CTCTCCAACCTGTCCTTGGCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATT GTGGACATGCAAACTCACAGCAGAGTCATCTCCTATGAAGGCTGCCTGACTCAGATGTCT TTTTTTGTCCTTTTTGCATGTATGGATGACATGCTCCTGAGTGTGATGGCCTATGACCGG TTTGTGGCCATCTGTCACCCCCTGCACTACCGAATCATCATGAACCCACGCCTCTGTGGC TTCTTAATCTTGTTGTCTTTTTTTATTAGTCTTTTGGACTCCCAGTTGCACAATTTGATT ATGTTACAGCTCACCTGCTTCAAGGATGTGGACATTTCTAATTTCTTCTGTGACCCTTCT CAACTCCTCCACCTTAGGTGTTCCGACACCTTCATCAATGAAATGGTCATATATTTCATG GGTGCCATATTTGGCTGTCTCCCTATCTCAGGGATCCTTTTCTCTTACTATAAAATTGTT TCCCCCATTCTGAGAGTTCCAACATCAGATGGGAAGTATAAAGCCTTCTCCACCTGTGGC TCTCACCTGGCAGTTGTTTGCTTATTTTATGGAACAGGGCTTGTAGGGTACCTCAGTTCA GCTGTGTTACCATCCCCCAGGAAGAGTATGGTGGCTTCAGTGATGTACACTGTGGTCACC CCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAAGGACATTCAAAGTGCCCTGTGC AGGCTGCATGGCAGAATCATCAAATCTCATCATCTCCATCCTTTTTGTTATATGGGA |
Conceptual translation |
MSYFPILFFFFLKRCPSYTEPQNLTGVSEFLLLGLSEDPELQPVLAGLFLSMYLVTVLGN LLIILAVSSDSHLHTPMYFFLSNLSLADIGFTSTTVPKMIVDMQTHSRVISYEGCLTQMS FFVLFACMDDMLLSVMAYDRFVAICHPLHYRIIMNPRLCGFLILLSFFISLLDSQLHNLI MLQLTCFKDVDISNFFCDPSQLLHLRCSDTFINEMVIYFMGAIFGCLPISGILFSYYKIV SPILRVPTSDGKYKAFSTCGSHLAVVCLFYGTGLVGYLSSAVLPSPRKSMVASVMYTVVT PMLNPFIYSLRNKDIQSALCRLHGRIIKSHHLHPFCYMG Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
19 | 100 | -100 | NS | C/T | P/S | 1000GP (YRI) |
19 | 100 | -100 | SYN | C/T | S/S | 1000GP (YRI) |
19 | 9,251,091 | 9,251,091 | SYN | G/A | P/P | 1000GP (CHBJPT) |
19 | 9,251,621 | 9,251,621 | NS | C/T | S/F | 1000GP (CEU, CHBJPT) |
19 | 9,251,667 | 9,251,667 | SYN | C/T | S/S | 1000GP (CEU, CHBJPT) |
19 | 9,251,767 | 9,251,767 | NS | C/T | P/S | 1000GP (CEU, CHBJPT) |
19 | 9,361,767 | 9,361,767 | SYN | A/G | P/P | rs60144766 (DbSNP) |
19 | 9,362,297 | 9,362,297 | NS | C/T | S/F | rs12980833 (DbSNP) |
19 | 9,362,336 | 9,362,336 | Del(1) | -/G | rs34185242 (DbSNP) | |
19 | 9,362,343 | 9,362,343 | SYN | C/T | S/S | rs2240927 (DbSNP) |
19 | 9,362,443 | 9,362,443 | NS | C/T | P/S | rs2240928 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
T56M | I64V | S193F | P242S | % Freq | CORP | |
---|---|---|---|---|---|---|
1 | T | I | S | P | 48.85 | 0.347 |
2 | T | I | S | S | 39.78 | 0.347 |
3 | T | I | F | S | 6.53 | 0.347 |
4 | T | V | S | S | 4.61 | 0.347 |
5 | M | V | S | S | 0.23 | 0.347 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR7E24.aApr07-unspliced | main_exon | CDS | chr19 | 9,251,044 | 9,252,060 | + |
3UTR | chr19 | 9,252,060 | 9,252,479 | + |