OR8D4 Olfactory Receptor
Gene Symbol | OR8D41 (View this gene in GeneCards) |
Family | 8 |
Subfamily | D |
Pseudogene | No |
CORP pseudogene probability score | 0.16 (functional) |
Aliases | OR11-275, HsOR11.18.5, ORL3289 |
External Ids | HGNC: 14840 GeneBank: AB065761, BK004313, NM_001005197 ORDB: ORL3289 |
Build #39 labels | OR8D4 |
Chromosomal location | 11:123,906,432-123,907,373 (+) |
Cluster | 11@124 |
Synteny | CLIC#29 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR8A1 | 65.05% | 309 |
OR8D1 | 65.25% | 305 |
60.45% | 311 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR8A1 | 66% | 309 |
Mouse | Or8d4 | 85% | 310 |
Rat | Or8d4 | 85% | 310 |
Cow | OR8A1 | 66% | 309 |
Orang | OR8D1 | 63% | 308 |
Horse | OR8D4B | 87% | 310 |
Horse | OR8D4CP | 86% | 311 |
Chimp | OR8D1 | 65% | 308 |
Expression evidences
Source | Accession |
---|---|
ESTs | AL706931 |
mRNA | BC137206 |
GNF Atlas2 | gnf1h05555_at |
GNF Atlas2 | gnf1h05556_s_at |
Sequence information
Nucleotide sequence |
ATGGGTGTAAAAAACCATTCCACAGTGACTGAGTTTCTTCTTTCAGGATTAACTGAACAA GCAGAGCTTCAGCTGCCCCTCTTCTGCCTCTTCTTAGGAATTTACACAGTTACTGTGGTG GGAAACCTCAGCATGATCTCAATTATTAGGCTGAATCGTCAACTTCATACCCCCATGTAC TATTTCCTGAGTAGTTTGTCTTTTTTAGATTTCTGCTATTCTTCTGTCATTACCCCTAAA ATGCTATCAGGGTTTTTATGCAGAGATAGATCCATCTCCTATTCTGGATGCATGATTCAG CTGTTTTTTTTCTGTGTTTGTGTTATTTCTGAATGCTACATGCTGGCAGCCATGGCCTGC GATCGCTACGTGGCCATCTGCAGCCCACTGCTCTACAGGGTCATCATGTCCCCTAGGGTC TGTTCTCTGCTGGTGGCTGCTGTCTTCTCAGTAGGTTTCACTGATGCTGTGATCCATGGA GGTTGTATACTCAGGTTGTCTTTCTGTGGATCAAACATCATTAAACATTATTTCTGTGAC ATTGTCCCTCTTATTAAACTCTCCTGCTCCAGCACTTATATTGATGAGCTTTTGATTTTT GTCATTGGTGGATTTAACATGGTGGCCACAAGCCTAACAATCATTATTTCATATGCTTTT ATCCTCACCAGCATCCTGCGCATCCACTCTAAAAAGGGCAGGTGCAAAGCGTTTAGCACC TGTAGCTCCCACCTGACAGCTGTTCTTATGTTTTATGGGTCTCTGATGTCCATGTATCTC AAACCTGCTTCTAGCAGTTCACTCACCCAGGAGAAAGTATCCTCAGTATTTTATACCACT GTGATTCTCATGTTGAATCCCTTGATATATAGTCTGAGGAACAATGAAGTAAGAAATGCT CTGATGAAACTTTTAAGAAGAAAAATATCTTTATCTCCAGGA |
Conceptual translation |
MGVKNHSTVTEFLLSGLTEQAELQLPLFCLFLGIYTVTVVGNLSMISIIRLNRQLHTPMY YFLSSLSFLDFCYSSVITPKMLSGFLCRDRSISYSGCMIQLFFFCVCVISECYMLAAMAC DRYVAICSPLLYRVIMSPRVCSLLVAAVFSVGFTDAVIHGGCILRLSFCGSNIIKHYFCD IVPLIKLSCSSTYIDELLIFVIGGFNMVATSLTIIISYAFILTSILRIHSKKGRCKAFST CSSHLTAVLMFYGSLMSMYLKPASSSSLTQEKVSSVFYTTVILMLNPLIYSLRNNEVRNA LMKLLRRKISLSPG Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | NS | T/G | L/R | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
11 | 100 | -100 | SYN | T/C | C/C | 1000GP (YRI) |
11 | 123,777,268 | 123,777,268 | NS | A/C | S/R | rs61734934 (DbSNP) |
11 | 123,777,289 | 123,777,289 | SYN | C/T | L/L | rs57888441 (DbSNP) |
11 | 123,777,302 | 123,777,302 | NS | G/T | R/L | rs17127947 (DbSNP) |
11 | 123,777,412 | 123,777,412 | NS | A/G | I/V | rs17127950 (DbSNP) |
11 | 123,777,497 | 123,777,497 | NS | A/G | Y/C | rs10750250 (DbSNP) |
11 | 123,777,498 | 123,777,498 | SYN | C/T | C/C | rs10893102 (DbSNP) |
11 | 123,777,502 | 123,777,502 | NS | C/T | R/C | rs61907183 (DbSNP) |
11 | 123,777,511 | 123,777,511 | NS | G/T | A/S | rs61745074 (DbSNP) |
11 | 123,777,536 | 123,777,536 | NS | A/G | K/R | rs7926767 (DbSNP) |
11 | 123,777,736 | 123,777,736 | NS | C/T | L/F | rs10790610 (DbSNP) |
11 | 123,777,752 | 123,777,752 | NS | C/T | S/F | rs12270203 (DbSNP) |
11 | 123,777,754 | 123,777,753 | Ins(1) | -/C | rs35139196 (DbSNP) | |
11 | 123,777,754 | 123,777,754 | NS | A/C | N/H | rs61744420 (DbSNP) |
11 | 123,777,861 | 123,777,861 | SYN | C/T | C/C | rs61748875 (DbSNP) |
11 | 123,777,986 | 123,777,986 | NS | C/T | P/L | rs7942047 (DbSNP) |
11 | 123,778,031 | 123,778,031 | NS | A/G | K/R | rs7927385 (DbSNP) |
11 | 123,906,595 | 123,906,595 | NS | T/G | L/R | 1000GP (CEU, CHBJPT) |
11 | 123,906,705 | 123,906,705 | NS | A/G | I/V | 1000GP (CEU, CHBJPT) |
11 | 123,906,790 | 123,906,790 | NS | G/A | C/Y | 1000GP (CEU, CHBJPT) |
11 | 123,906,791 | 123,906,791 | SYN | C/T | C/C | 1000GP (CEU, CHBJPT) |
11 | 123,906,795 | 123,906,795 | NS | C/T | R/C | 1000GP (CEU) |
11 | 123,906,829 | 123,906,829 | NS | G/A | R/K | 1000GP (CEU, CHBJPT) |
11 | 123,906,839 | 123,906,839 | NS | G/C | M/I | 1000GP (CEU) |
11 | 123,907,029 | 123,907,029 | NS | T/C | F/L | 1000GP (CEU, CHBJPT) |
11 | 123,907,154 | 123,907,154 | SYN | T/C | C/C | 1000GP (CEU, CHBJPT) |
11 | 123,907,279 | 123,907,279 | NS | T/C | L/P | 1000GP (CEU, CHBJPT) |
11 | 123,907,324 | 123,907,324 | NS | G/A | R/K | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
T38S | S44R | I48V | L55R | I92V | A125S | R133K | M136I | F200L | N206H | S239N | L283P | R298K | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | T | S | I | L | I | A | K | M | L | N | S | P | K | 25.12 | 0.300 |
2 | T | S | I | L | I | A | K | M | F | N | S | P | K | 22.20 | 0.300 |
3 | T | S | I | R | V | A | K | M | F | N | S | P | K | 17.67 | 0.792 |
4 | T | S | I | L | I | A | R | M | F | N | S | L | R | 15.90 | 0.446 |
5 | T | S | I | L | I | A | R | M | F | N | S | P | R | 13.29 | 0.300 |
6 | T | S | I | R | V | A | K | M | F | N | N | P | K | 2.15 | 0.857 |
7 | T | S | I | L | I | S | K | M | F | N | S | P | K | 1.84 | 1.000 |
8 | T | S | V | L | I | A | R | M | F | N | S | P | R | 0.31 | 0.300 |
9 | T | S | I | L | I | A | K | M | F | N | S | P | R | 0.31 | 0.300 |
10 | T | R | I | L | I | A | K | M | F | H | S | P | K | 0.31 | 0.300 |
11 | T | S | I | L | I | A | R | M | F | N | S | P | K | 0.23 | 0.300 |
12 | T | S | I | L | I | A | R | M | L | N | S | P | K | 0.08 | 0.300 |
13 | T | S | I | L | I | A | K | M | L | N | S | L | K | 0.08 | 0.446 |
14 | T | S | I | L | I | A | K | I | L | N | S | P | K | 0.08 | 0.377 |
15 | T | S | I | R | V | A | R | M | F | N | S | P | K | 0.08 | 0.792 |
16 | T | S | I | L | V | A | R | M | F | N | S | L | R | 0.08 | 0.573 |
17 | T | S | I | R | V | A | K | M | F | N | S | P | R | 0.08 | 0.792 |
18 | S | S | I | L | I | A | K | M | L | N | S | P | K | 0.08 | 0.300 |
19 | T | S | I | L | I | A | R | M | F | N | S | L | K | 0.08 | 0.446 |
20 | T | S | I | L | I | A | K | M | L | N | N | P | K | 0.08 | 0.403 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR8D4.aApr07-unspliced | main_exon | 5UTR | chr11 | 123,906,146 | 123,906,432 | + |
CDS | chr11 | 123,906,432 | 123,907,373 | + | ||
3UTR | chr11 | 123,907,373 | 123,907,376 | + |