OR9A4 Olfactory Receptor
| Gene Symbol | OR9A41 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | A |
| Pseudogene | No |
| CORP pseudogene probability score | 1 (pseudogene) |
| Aliases | OR7-1, HsOR7.5.3, ORL3174 |
| External Ids | HGNC: 15095 GeneBank: AB065689, BK004278, NM_001001656 ORDB: ORL3174 |
| Build #39 labels | OR9A4 |
| Chromosomal location | 7:141,918,876-141,919,817 (+) |
| Cluster | 7@142 |
| Synteny | CLIC#14 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9A2 | 78.34% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9A4C | 85% | 314 |
| Dog | OR9A4B | 85% | 314 |
| Mouse | Or9a4 | 84% | 314 |
| Rat | Or9a4 | 83% | 314 |
| Cow | OR9A2 | 79% | 314 |
| Orang | OR9A4P | 93% | 258 |
| Horse | OR9A4P | 86% | 314 |
| Horse | OR9A4EP | 84% | 314 |
| Chimp | OR9A2P | 81% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DA828273 |
| mRNA | BC136821 |
| GNF Atlas2 | gnf1h04815_at |
Sequence information
| Nucleotide sequence |
ATGTTGATGAATTACTCTAGTGCCACTGAATTTTATCTCCTTGGCTTCCCTGGCTCTGAA GAACTACATCATATCCTTTTTGCTATATTCTTCTTTTTCTACTTGGTGACATTAATGGGA AACACAGTCATCATCATGATTGTCTGTGTGGATAAACGTCTGCAGTCCCCCATGTATTTC TTCCTCGGCCACCTCTCTGCCCTGGAGATCCTGGTCACAACCATAATCGTCCCCGTGATG CTTTGGGGATTGCTGCTCCCTGGGATGCAGACAATATATTTGTCTGCCTGTGTTGTCCAG CTCTTCTTGTACCTTGCTGTGGGGACAACAGAGTTCGCATTACTTGGAGCAATGGCTGTG GACCGTTATGTGGCTGTCTGTAACCCTCTGAGGTACAACATCATTATGAACAGACACACC TGCAACTTTGTGGTTCTTGTGTCATGGGTGTTTGGGTTTCTTTTTCAAATCTGGCCGGTC TATGTCATGTTTCAGCTTACTTACTGCAAATCAAATGTGGTGAACAATTTTTTTTGTGAC CGAGGGCAATTGCTCAAACTATCCTGCAATAATACTCTTTTCACGGAGTTTATCCTCTTC TTAATGGCTGTTTTTGTTCTCTTTGGTTCTTTGATCCCTACAATTGTCTCCAACGCCTAC ATCATCTCCACCATTCTCAAGATCCCGTCATCCTCTGGCCGGAGGAAATCCTTCTCCACT TGTGCCTCCCACTTCACCTGTGTTGTGATTGGCTACGGCAGCTGCTTGTTTCTCTACGTG AAACCCAAGCAAACGCAGGCAGCTGATTACAATTGGGTAGTTTCCCTGATGGTTTCAGTA GTAACTCCTTTCCTCAATCCTTTCATCTTCACCCTCCGGAATGATAAAGTCATAGAGGCC CTTCGGGATGGGGTGAAACGCTGCTGTCAACTATTCAGGAAT |
| Conceptual translation |
MLMNYSSATEFYLLGFPGSEELHHILFAIFFFFYLVTLMGNTVIIMIVCVDKRLQSPMYF FLGHLSALEILVTTIIVPVMLWGLLLPGMQTIYLSACVVQLFLYLAVGTTEFALLGAMAV DRYVAVCNPLRYNIIMNRHTCNFVVLVSWVFGFLFQIWPVYVMFQLTYCKSNVVNNFFCD RGQLLKLSCNNTLFTEFILFLMAVFVLFGSLIPTIVSNAYIISTILKIPSSSGRRKSFST CASHFTCVVIGYGSCLFLYVKPKQTQAADYNWVVSLMVSVVTPFLNPFIFTLRNDKVIEA LRDGVKRCCQLFRN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | nonsense SNP | C/T | Q/* | 1000GP (YRI) |
| 7 | 100 | -100 | NS | T/C | Y/H | 1000GP (YRI, YRI) |
| 7 | 100 | -100 | SYN | C/T | F/F | 1000GP (YRI, YRI, YRI) |
| 7 | 141,619,011 | 141,619,011 | SYN | C/T | F/F | rs73529456 (DbSNP) |
| 7 | 141,619,035 | 141,619,035 | SYN | A/G | V/V | rs12671371 (DbSNP) |
| 7 | 141,619,152 | 141,619,152 | SYN | A/G | P/P | rs12671397 (DbSNP) |
| 7 | 141,619,365 | 141,619,365 | SYN | A/G | S/S | rs73529458 (DbSNP) |
| 7 | 141,919,150 | 141,919,150 | NS | T/C | I/T | 1000GP (CEU) |
| 7 | 141,919,235 | 141,919,235 | SYN | G/A | V/V | 1000GP (CHBJPT) |
| 7 | 141,919,589 | 141,919,589 | SYN | C/T | F/F | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 141,602,319 | 141,642,997 | CopyNumber | Variation_36625 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| L86I | Y123H | % Freq | CORP | |
|---|---|---|---|---|
| 1 | L | Y | 96.55 | 1.000 |
| 2 | I | Y | 1.72 | 1.000 |
| 3 | L | H | 1.72 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9A4.aApr07-unspliced | main_exon | CDS | chr7 | 141,918,876 | 141,919,817 | + |
| 3UTR | chr7 | 141,919,817 | 141,919,820 | + | ||