HORDE: Information for CLIC#1

Information for CLIC#1


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#1 composed of the following clusters*:

Human Mouse Rat Dog Opossum
- chr4@117.8 chr5@139.3 chr15@3.3 s13629@2.4
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

mouse:
OR members in cluster chr4@117.8

SymbolChromosomeStartEndStrand
Or13p4 chr4 118,689,506 118,690,450 -
Or13p8 chr4 118,726,183 118,727,193 +
Or13p5 chr4 118,734,531 118,735,475 +
Or13p7 chr4 118,893,037 118,894,029 +
Or13p10 chr4 118,665,333 118,666,463 +
Or10ak14 chr4 118,753,598 118,754,590 -
Or13p9-ps chr4 118,672,624 118,673,522 -
Or10ak8 chr4 118,916,527 118,917,519 -
Or13p3 chr4 118,709,409 118,710,344 +
Or10ak7 chr4 118,933,902 118,934,894 -

rat:
OR members in cluster chr5@139.3

SymbolChromosomeStartEndStrand
Or10ak7c-ps chr5 137,957,341 137,957,862 -
Or10ak13 chr5 137,873,745 137,874,692 -
Or10ak7e chr5 137,900,646 137,901,614 -
Or13p10 chr5 137,497,581 137,498,525 +
Or10ak7b-ps chr5 137,812,062 137,813,009 -
Or10ak14 chr5 137,602,533 137,603,471 -
Or10ak7f chr5 137,845,492 137,846,484 -
Or13p9 chr5 137,514,755 137,515,690 -
Or13p4-ps chr5 137,527,228 137,528,176 -
Or13p3 chr5 137,546,860 137,547,795 +
Or10ak7g-ps chr5 137,986,268 137,986,786 -
Or10ak7d-ps chr5 137,942,485 137,943,423 -
Or10ak7 chr5 137,927,163 137,928,131 -

dog:
OR members in cluster chr15@3.3

SymbolChromosomeStartEndStrand
OR13P5 chr15 299839 300783 +
OR13P2 chr15 235915 236850 -
OR13P3 chr15 278072 279010 +
OR13P4 chr15 257720 258664 -

opossum:
OR members in cluster s13629@2.4

SymbolChromosomeStartEndStrand
Modo-OR10AK6P scaffold_13629 2411122 2412010 +
Modo-OR10AK3 scaffold_13629 2335365 2336301 +
Modo-OR10AK5P scaffold_13629 2483844 2484790 +
Modo-OR10AK2 scaffold_13629 2273711 2274647 +
Modo-OR13P4 scaffold_13629 2454341 2455286 +
Modo-OR10AK4 scaffold_13629 2374417 2375416 +


List of all CLICs
Horde homepage