HORDE: Information for CLIC#10

Information for CLIC#10


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#10 composed of the following clusters*:

Human Mouse Rat Dog Opossum
- chr11@50.8 chr10@36.6 chr11@9.2 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

mouse:
OR members in cluster chr11@50.8

SymbolChromosomeStartEndStrand
Or1ad1 chr11 50,984,703 50,985,623 +
Or1x2 chr11 51,027,004 51,027,942 +
Or1x6 chr11 51,048,109 51,049,047 +
Or1ad6 chr11 50,969,020 50,969,964 +
Or1ad8 chr11 51,006,974 51,007,894 +

rat:
OR members in cluster chr10@36.6

SymbolChromosomeStartEndStrand
Or1x2d chr10 36,567,194 36,568,129 +
Or1ad1 chr10 36,477,518 36,478,612 +
Or1ad5 chr10 36,485,605 36,486,513 +
Or1x2 chr10 36,530,719 36,531,657 +
Or1ad1b-ps chr10 36,456,679 36,457,005 +
Or1ad6 chr10 36,466,163 36,467,173 +
Or1x2b chr10 36,517,169 36,518,107 +
Or1ad8 chr10 36,499,337 36,500,281 +

dog:
OR members in cluster chr11@9.2

SymbolChromosomeStartEndStrand
OR1AD1 chr11 2709380 2710315 -
OR1X2 chr11 2864624 2865562 +


List of all CLICs
Horde homepage