HORDE: Information for CLIC#11

Information for CLIC#11


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#11 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr5@180.1 chr5@180.6 chr11@49.1 chr10@34.3 chr10@34.9 - s16810@0.6
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr5@180.1

SymbolChromosomeStartEndStrand
OR2Y1 5 180739126 180740058 -
OR2AI1P 5 180692835 180693763 -

OR members in cluster chr5@180.6

SymbolChromosomeStartEndStrand
OR4F3 5 181367287 181368222 +
OR2V2 5 181154943 181155887 +
OR2V1 5 181124360 181125304 -

mouse:
OR members in cluster chr11@49.1

SymbolChromosomeStartEndStrand
Or2v1 chr11 49,134,194 49,135,138 +
Or2t26 chr11 49,148,259 49,149,209 +
Or2y1g chr11 49,280,150 49,281,082 +
Or2v2 chr11 49,112,780 49,113,775 -
Or2y1d chr11 49,430,478 49,431,410 +
Or2o1 chr11 49,159,980 49,160,951 +
Or8k28 chr2 86,455,331 86,456,269 -

rat:
OR members in cluster chr10@34.3

SymbolChromosomeStartEndStrand
Or2v1 chr10 34,383,396 34,384,340 +
Or2v2b chr10 34,360,268 34,361,293 -
Or2v2c chr10 34,300,253 34,301,293 -

OR members in cluster chr10@34.9

SymbolChromosomeStartEndStrand
Or2y1i chr10 34,692,870 34,693,796 +
Or2y14 chr10 34,726,937 34,727,866 +
Or2y16 chr10 34,645,375 34,646,307 +
Or2y1e chr10 34,578,356 34,579,288 +
Or2y1 chr10 34,712,870 34,713,802 +
Or2y15 chr10 34,662,186 34,663,118 +
Or2y11 chr10 34,804,878 34,805,810 +
Or2y12 chr10 34,756,094 34,757,026 +
Or2y1g chr10 34,553,284 34,554,216 +
Or2y1d chr10 34,631,398 34,632,324 +
Or2y13 chr10 34,744,059 34,744,991 +
Or2y1h chr10 34,564,009 34,564,941 +
Or2y1c chr10 34,672,726 34,673,652 +
Or2y17 chr10 34,592,674 34,593,534 +

opossum:
OR members in cluster s16810@0.6

SymbolChromosomeStartEndStrand
Modo-OR2BE1 scaffold_16810 625405 626362 +
Modo-OR2V5 scaffold_16810 594859 595804 -
Modo-OR2BE2 scaffold_16810 440406 441444 +
Modo-OR1F15 scaffold_16810 846216 847158 +
Modo-OR2V4 scaffold_16810 569724 570669 -


List of all CLICs
Horde homepage