HORDE: Information for CLIC#12

Information for CLIC#12

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#12 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr6@28.1 chr6@28.5 chr6@29.4 chr13@20.9 chr17@35.5 chr17@50.6 chr17@51.3 chr20@0.8 chr35@28.1 chr35@29.2 s14804@0.5
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr6@28.1

SymbolChromosomeStartEndStrand
OR2B8P 6 28053231 28054180 -
OR2B6 6 27957241 27958179 +
OR2W4P 6 27977150 27978072 +
OR2B2 6 27911249 27912319 -
OR2W6P 6 27937403 27938400 +
OR2B7P 6 28046434 28047368 +
OR2W2P 6 28033914 28034861 +
OR1F12 6 28073316 28074236 +

OR members in cluster chr6@28.5

SymbolChromosomeStartEndStrand
OR2E1P 6 28455638 28456111 -

OR members in cluster chr6@29.4

SymbolChromosomeStartEndStrand
OR10C1 6 29440016 29440951 +
OR2J2 6 29173636 29174571 +
OR2W1 6 29044216 29045175 -
OR2J1P 6 29,100,949 29,101,878 +
OR2I1P 6 29553189 29554160 +
OR2U1P 6 29262659 29264079 -
OR2AD1P 6 29026656 29027607 -
OR2H2 6 29587945 29588880 +
OR2B3 6 29086310 29087248 -
OR12D1P 6 29417280 29418208 +
OR2P1P 6 29071832 29072566 -
OR2H1 6 29461770 29462717 +
OR11A1 6 29426697 29427641 -
OR2N1P 6 29137883 29138816 -
OR2H5P 6 29573897 29574833 +
OR2G1P 6 29229230 29230220 -
OR12D3 6 29374340 29375287 -
OR2H4P 6 29215236 29216176 +
OR5V1 6 29355233 29356195 -
OR12D2 6 29396700 29397620 +
OR14J1 6 29306690 29307652 +
OR2J3 6 29111891 29112823 +
OR2U2P 6 29268477 29269421 -
OR2J4P 6 29181510 29182442 +
OR2B4P 6 29290696 29291650 +

mouse:
OR members in cluster chr13@20.9

SymbolChromosomeStartEndStrand
Or8u10 chr2 86,084,813 86,085,775 -
Or1f12 chr13 21,537,020 21,538,063 -
Or2y1d chr11 49,430,478 49,431,410 +
Or2w4 chr13 21,611,044 21,611,967 -

OR members in cluster chr17@35.5

SymbolChromosomeStartEndStrand
Or8u10 chr2 86,084,813 86,085,775 -
Or1o1 chr17 37,405,550 37,406,476 +
Or10c1 chr17 37,210,916 37,211,851 -
Or2y1d chr11 49,430,478 49,431,410 +
Or12d16-ps chr17 37,394,581 37,395,507 +
Or1w2 chr17 37,262,736 37,263,662 -
Or2n1d chr17 38,335,159 38,336,094 +
Or10al3 chr17 37,700,672 37,701,634 +
Or2y9-ps chr11 51,142,532 51,143,464 +
Or14j2 chr17 37,574,486 37,575,496 -
Or2y1g chr11 49,280,150 49,281,082 +
Or12d12 chr17 37,299,497 37,300,420 -
Or14j10 chr17 37,623,671 37,624,633 -
Or14j9 chr17 37,563,350 37,564,384 -
Or10al4 chr17 37,725,999 37,726,988 +
Or12d17 chr17 37,466,208 37,467,149 +
Or14j1 chr17 37,835,001 37,835,960 +
Or10al5 chr17 37,751,856 37,752,818 +
Or12d14-ps chr17 37,362,158 37,363,084 +
Or12d13 chr17 37,336,292 37,337,230 -
Or14j6 chr17 37,903,548 37,904,516 +
Or1t1 chr17 37,445,523 37,446,482 +
Or2g1 chr17 37,795,446 37,796,372 +
Or5v1 chr17 37,498,464 37,499,603 +
Or10al7 chr17 38,054,602 38,055,744 -
Or14j8 chr17 37,952,054 37,953,022 -
Or1w1 chr17 37,231,439 37,232,368 -
Or1w3 chr17 37,279,504 37,280,418 -
Or11a4 chr17 37,225,127 37,226,065 +
Or10al8 chr17 37,725,999 37,726,988 +
Or12d15 chr17 37,382,641 37,383,483 +
Or2w1 chr13 21,132,777 21,133,727 +
Or8k28 chr2 86,455,331 86,456,269 -

rat:
OR members in cluster chr17@50.6

SymbolChromosomeStartEndStrand
Or2w6 chr17 44,947,497 44,948,432 -
Or2b2c-ps chr17 44,889,372 44,890,482 +
Or1f12-ps chr17 45,070,016 45,071,153 +
Or2w2 chr17 45,003,123 45,004,040 +
Or2b2 chr17 44,852,492 44,853,430 -

OR members in cluster chr17@51.3

SymbolChromosomeStartEndStrand
Or2p2 chr17 45,801,528 45,802,475 +
Or2w1 chr17 45,687,105 45,688,058 -
Or2ad1 chr17 45,670,284 45,671,219 +

OR members in cluster chr20@0.8

SymbolChromosomeStartEndStrand
Or2n1k chr20 498,883 499,923 -
Or1o1 chr20 1,515,464 1,516,393 -
Or2g7 chr20 637,863 638,813 -
Or2h1 chr20 1,936,438 1,937,373 +
Or1w1e chr20 1,809,154 1,810,080 +
Or10al5b chr20 1,098,383 1,099,372 -
Or14j7 chr20 820,367 821,332 -
Or14j10e-ps chr20 1,224,540 1,225,475 -
Or10al4b chr20 1,079,477 1,080,439 -
Or2ay1-ps chr20 1,117,096 1,117,652 -
Or1w1d chr20 1,825,885 1,826,805 +
Or2j3 chr20 399,034 399,969 -
Or2g25 chr20 1,110,773 1,111,723 +
Or10al3 chr20 1,089,166 1,090,128 -
Or10al4c chr20 1,052,333 1,053,295 -
Or2y3-ps chr20 628,751 629,470 +
Or5v1b chr20 1,647,469 1,648,422 +
Or14j11-ps chr20 1,216,310 1,217,434 +
Or10al4 chr20 1,061,729 1,062,691 -
Or2h1c-ps chr20 1,904,641 1,905,576 +
Or14j1 chr20 830,488 831,447 -
Or14j10b chr20 1,021,552 1,022,529 +
Or12d2 chr20 1,749,716 1,750,639 +
Or2n1e chr20 321,988 322,926 -
Or2h2 chr20 1,944,872 1,945,801 +
Or11a10-ps chr20 1,692,325 1,693,150 +
Or14j10d chr20 1,197,671 1,198,681 +
Or2g1 chr20 859,147 860,109 -
Or14j3 chr20 1,164,821 1,165,756 +
Or10al7 chr20 649,555 650,544 +
Or11a11-ps chr20 1,545,165 1,545,476 +
Or1w1f-ps chr20 1,505,142 1,505,696 -
Or14j5e chr20 734,642 735,643 +
Or1w1c chr20 1,546,897 1,547,823 -
Or14j10-ps chr20 1,033,496 1,034,633 +
Or11a4 chr20 1,845,213 1,846,151 -
Or14j3b chr20 1,012,042 1,012,989 +
Or2n1f-ps chr20 407,914 409,053 -
Or2h1b-ps chr20 1,930,890 1,931,830 +
Or11a8-ps chr20 1,287,020 1,287,802 -
Or10c1 chr20 1,861,288 1,862,223 +
Or2h15 chr20 572,454 573,392 +
Or14j3e chr20 1,185,036 1,186,046 +
Or1w1b chr20 1,694,457 1,695,383 -
Or2h16-ps chr20 427,670 428,686 +
Or2n1h chr20 386,421 387,356 +
Or14j5c chr20 752,888 753,856 -
Or2n1j chr20 514,025 514,960 -
Or2n1 chr20 556,047 556,982 -
Or14j5 chr20 775,504 776,472 -
Or1t1c-ps chr20 1,601,134 1,602,056 -
Or2b4 chr20 847,288 848,229 -
Or1t1b-ps chr20 1,577,657 1,578,590 -
Or11b1-ps chr20 1,829,378 1,830,288 -
Or2h2c chr20 1,889,382 1,890,587 +
Or12d2c chr20 1,781,320 1,782,243 +
Or2n1n chr20 472,636 473,571 -
Or12d13 chr20 1,736,391 1,737,329 +
Or1t1 chr20 1,299,570 1,300,496 +
Or14j5b chr20 794,318 795,286 -
Or14j3d chr20 1,172,891 1,173,802 +
Or1w1 chr20 1,838,064 1,838,990 +
Or11a9-ps chr20 1,527,537 1,528,291 +
Or2n1g chr20 421,529 422,464 -
Or2j5-ps chr20 367,259 367,699 +
Or11a7-ps chr20 1,302,626 1,303,443 -
Or2n1i chr20 528,089 529,135 -
Or12d2b chr20 1,764,858 1,765,784 +
Or2n1l chr20 486,337 487,272 -
Or11a4b-ps chr20 1,598,986 1,599,796 +

dog:
OR members in cluster chr35@28.1

SymbolChromosomeStartEndStrand
OR2B8 chr35 25214920 25215891 -
OR2W6 chr35 25108115 25109050 +
OR2B7 chr35 25193885 25194859 +
OR2W4 chr35 25147860 25148786 +
OR2B10P chr35 25127595 25128444 +
OR2B2 chr35 25078791 25079729 -

OR members in cluster chr35@29.2

SymbolChromosomeStartEndStrand
OR10C1 chr35 26178595 26179530 +
OR2W1 chr35 26118359 26119297 -
OR2H9P chr35 26425052 26425969 -
OR2AD2 chr35 26016797 26017738 -

opossum:
OR members in cluster s14804@0.5

SymbolChromosomeStartEndStrand
Modo-OR2H12 scaffold_14804 468872 469790 -
Modo-OR12D4P scaffold_14804 790249 791183 -
Modo-OR12D3P scaffold_14804 705148 706096 -
Modo-OR11A1 scaffold_14804 843818 844769 -
Modo-OR2G9 scaffold_14804 567160 568093 -
Modo-OR2U3P scaffold_14804 71645 72533 -
Modo-OR2I1P scaffold_14804 969692 970628 +
Modo-OR12D2 scaffold_14804 736481 737414 -
Modo-OR2G10 scaffold_14804 600347 601271 -
Modo-OR12D7P scaffold_14804 779609 780555 -
Modo-OR2B4 scaffold_14804 631493 632435 +
Modo-OR10AL1 scaffold_14804 370005 370971 +
Modo-OR2N1 scaffold_14804 144085 145042 -
Modo-OR2W15 scaffold_14804 33219 34161 -
Modo-OR2H11 scaffold_14804 328360 329302 -
Modo-OR2G1 scaffold_14804 476423 477353 -
Modo-OR12D8 scaffold_14804 805260 806196 -
Modo-OR10C2 scaffold_14804 893822 894761 +
Modo-OR2Y3 scaffold_14804 290012 290972 +
Modo-OR2H2P scaffold_14804 987577 988499 +
Modo-OR2H13 scaffold_14804 414049 414967 -
Modo-OR2B2 scaffold_14804 216904 217846 -
Modo-OR11W1 scaffold_14804 864821 865775 +
Modo-OR2G8 scaffold_14804 533796 534738 -
Modo-OR12D5P scaffold_14804 783023 783644 -
Modo-OR2G7 scaffold_14804 502565 503486 -
Modo-OR2H4 scaffold_14804 252311 253256 +

List of all CLICs
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