HORDE: Information for CLIC#16

Information for CLIC#16

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#16 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr7@142.7 chr7@143.3 chr6@43 chr4@70.9 chr16@11.7 s12761@1.3
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr7@142.7

SymbolChromosomeStartEndStrand
OR10AC1P 7 143510957 143511911 -
OR2R1P 7 143488465 143489411 -

OR members in cluster chr7@143.3

SymbolChromosomeStartEndStrand
OR6B1 7 144003997 144004929 +
OR2A42 7 144231914 144232843 -
OR2A1 7 144318125 144319054 +
OR2A12 7 144095108 144096037 +
OR2A5 7 144050402 144051334 +
OR2Q1P 7 143980905 143981832 +
OR2F1 7 143959971 143960921 +
OR2A3P 7 144157226 144158156 +
OR2AO1P 7 144176740 144177516 +
OR2A25 7 144074220 144075149 +
OR2A9P 7 144299373 144300302 +
OR2A15P 7 144118464 144119360 -
OR2F2 7 143935233 143936183 +
OR2A20P 7 144250674 144251603 -
OR2A2 7 144109583 144110536 +
OR2A7 7 144258699 144259628 -
OR2A14 7 144129113 144130042 +
OR2A41P 7 144077393 144077854 +
OR2A13P 7 144142009 144142938 +

mouse:
OR members in cluster chr6@43

SymbolChromosomeStartEndStrand
Or6z6 chr7 6,487,916 6,488,872 -
Or2r3 chr6 42,471,238 42,472,176 -
Or2a7 chr6 43,173,988 43,174,917 +
Or2f1b chr6 42,762,054 42,763,004 +
Or2q1 chr6 42,817,473 42,818,402 +
Or2a56 chr6 42,955,500 42,956,429 +
Or2a52 chr6 43,166,979 43,167,989 +
Or13m2-ps chr6 42,800,743 42,801,675 +
Or2a54 chr6 43,115,744 43,116,673 +
Or2a57 chr6 43,235,610 43,236,572 +
Or13q3 chr6 42,460,079 42,461,017 -
Or2a51 chr6 43,201,646 43,202,584 +

rat:
OR members in cluster chr4@70.9

SymbolChromosomeStartEndStrand
Or2f1-ps chr4 72,221,979 72,222,500 +
Or10ac1 chr4 71,957,824 71,958,774 -
Or2r3b chr4 71,892,368 71,893,306 -
Or2f2 chr4 72,272,809 72,273,762 +
Or2r3 chr4 71,880,714 71,881,652 -
Or2a5 chr4 72,480,540 72,481,469 +
Or13q3 chr4 71,869,332 71,870,273 -
Or2f5-ps chr4 72,194,875 72,195,316 +
Or2a12-ps chr4 72,523,492 72,524,100 +
Or2a14 chr4 72,566,790 72,567,719 +
Or6b1 chr4 72,332,481 72,333,422 +
Or13m2 chr4 72,292,261 72,293,193 +
Or2f1b chr4 72,239,942 72,240,889 +
Or2q1 chr4 72,307,807 72,308,805 +
Or2a7-ps chr4 72,603,494 72,604,171 +
Or2a57 chr4 72,670,543 72,671,502 +
Or2a25 chr4 72,502,935 72,503,873 +
Or2a51 chr4 72,637,035 72,637,973 +
Or2a20 chr4 72,656,125 72,657,084 +

dog:
OR members in cluster chr16@11.7

SymbolChromosomeStartEndStrand
OR6B1 chr16 5884857 5885780 -
OR13Q1P chr16 6221988 6222583 +
OR2F1D chr16 5942882 5943916 -
OR2A12 chr16 5809672 5810601 -
OR2A5 chr16 5842192 5843121 -
OR2A13 chr16 5781390 5782316 -
OR2Q1 chr16 5903913 5904851 -
OR2F1C chr16 5992679 5993767 -
OR2R1 chr16 6214126 6215064 +
OR2F1 chr16 5966899 5967849 -
OR2A9B chr16 5692470 5693408 -
OR2A9 chr16 5712226 5713164 -
OR2A25 chr16 5826285 5827214 -
OR2Q2 chr16 5918921 5919853 -
OR10AC1 chr16 6188097 6189059 +
OR2F2 chr16 6016467 6017417 -
OR13M5P chr16 6000132 6000632 -
OR2A7 chr16 5725754 5726683 -
OR2A14 chr16 5795912 5796841 -

opossum:
OR members in cluster s12761@1.3

SymbolChromosomeStartEndStrand
Modo-OR2BI1P scaffold_12761 1265918 1266787 -
Modo-OR2A47P scaffold_12761 1543393 1544372 +
Modo-OR2F3 scaffold_12761 1118913 1119867 +
Modo-OR10AC2 scaffold_12761 965240 966173 -
Modo-OR2A32 scaffold_12761 1506955 1507894 +
Modo-OR13Q5 scaffold_12761 905596 906499 -
Modo-OR2A9P scaffold_12761 1346444 1347374 +
Modo-OR13Q4 scaffold_12761 923823 924753 -
Modo-OR13M1 scaffold_12761 1169253 1170210 +
Modo-OR2A45P scaffold_12761 1404283 1405214 +
Modo-OR6B5 scaffold_12761 1210147 1211092 +
Modo-OR2A39 scaffold_12761 1315248 1316178 +
Modo-OR13M6 scaffold_12761 1197585 1198539 +
Modo-OR2A35 scaffold_12761 1280198 1281128 +
Modo-OR52V3P scaffold_12761 1672517 1673320 +
Modo-OR2A43 scaffold_12761 1474576 1475503 +
Modo-OR2F4 scaffold_12761 1149197 1150124 +
Modo-OR2Q1 scaffold_12761 1763770 1764703 -
Modo-OR2A49P scaffold_12761 1422099 1422939 +
Modo-OR13M2P scaffold_12761 1706454 1707388 -
Modo-OR2A44P scaffold_12761 1363410 1364339 +
Modo-OR2A33 scaffold_12761 1258556 1259486 +
Modo-OR2A46 scaffold_12761 1519661 1520588 +
Modo-OR2A48 scaffold_12761 1457252 1458176 +

List of all CLICs
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