HORDE: Information for CLIC#18

Information for CLIC#18

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#18 composed of the following clusters^*:

Human Mouse Rat Dog Opossum

- chr13@62.6 chr17@5.5 - -

^* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

Human	Mouse	Rat	Dog	Opossum
-	chr13@62.6	chr17@5.5	-	-

mouse:
OR members in cluster chr13@62.6

Symbol Chromosome Start End Strand
Or14p1 chr13 65,144,261 65,145,205 +

Or9h1 chr13 65,152,226 65,153,149 +

Symbol	Chromosome	Start	End	Strand
Or14p1	chr13	65,144,261	65,145,205	+
Or9h1	chr13	65,152,226	65,153,149	+

rat:
OR members in cluster chr17@5.5

Symbol Chromosome Start End Strand
Or14p1 chr17 2,690,005 2,691,006 +

Or9h1 chr17 2,704,200 2,705,123 -

Symbol	Chromosome	Start	End	Strand
Or14p1	chr17	2,690,005	2,691,006	+
Or9h1	chr17	2,704,200	2,705,123	-

List of all CLICs
Horde homepage