HORDE: Information for CLIC#2

Information for CLIC#2


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#2 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr1@111.1 chr3@106.6 chr2@202.2 chr6@42.7 s13511@1.9
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr1@111.1

SymbolChromosomeStartEndStrand
OR11I1P 1 110853939 110854889 +

mouse:
OR members in cluster chr3@106.6

SymbolChromosomeStartEndStrand
Or11i1 chr3 106,821,610 106,822,557 -

rat:
OR members in cluster chr2@202.2

SymbolChromosomeStartEndStrand
Or11i1 chr2 209,581,680 209,582,627 -

dog:
OR members in cluster chr6@42.7

SymbolChromosomeStartEndStrand
OR11I1 chr6 41127835 41128785 -

opossum:
OR members in cluster s13511@1.9

SymbolChromosomeStartEndStrand
Modo-OR11I3P scaffold_13511 1920532 1921481 +


List of all CLICs
Horde homepage