HORDE: Information for CLIC#21

Information for CLIC#21

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#21 composed of the following clusters^*:

Human Mouse Rat Dog Opossum

chr9@122.5 chr2@36.7 chr3@16 chr9@52.6 s15087@1.4

^* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

Human	Mouse	Rat	Dog	Opossum
chr9@122.5	chr2@36.7	chr3@16	chr9@52.6	s15087@1.4

human:
OR members in cluster chr9@122.5

Symbol Chromosome Start End Strand
OR1B1 9 122628582 122629535 -

OR1Q1 9 122614738 122615679 +

OR1N1 9 122526361 122527293 -

OR1J4 9 122519141 122520079 +

OR1H1P 9 122607864 122608797 +

OR1N2 9 122553212 122554159 +

OR1L4 9 122723990 122724922 +

OR5C1 9 122788933 122789892 +

OR1L3 9 122675130 122676101 +

OR1L1 9 122661716 122662645 +

OR1L8 9 122567551 122568477 -

OR1K1 9 122800123 122801070 +

OR1L6 9 122749848 122750780 +

OR1J2 9 122510802 122511740 +

OR1J1 9 122477009 122477926 -

Symbol	Chromosome	Start	End	Strand
OR1B1	9	122628582	122629535	-
OR1Q1	9	122614738	122615679	+
OR1N1	9	122526361	122527293	-
OR1J4	9	122519141	122520079	+
OR1H1P	9	122607864	122608797	+
OR1N2	9	122553212	122554159	+
OR1L4	9	122723990	122724922	+
OR5C1	9	122788933	122789892	+
OR1L3	9	122675130	122676101	+
OR1L1	9	122661716	122662645	+
OR1L8	9	122567551	122568477	-
OR1K1	9	122800123	122801070	+
OR1L6	9	122749848	122750780	+
OR1J2	9	122510802	122511740	+
OR1J1	9	122477009	122477926	-

mouse:
OR members in cluster chr2@36.7

Symbol Chromosome Start End Strand
Or12k6-ps chr2 37,019,242 37,020,202 -

Or1j14 chr2 36,527,414 36,528,349 +

Or12k8 chr2 37,084,781 37,085,746 -

Or1j19 chr2 36,786,527 36,787,465 +

Or1j18 chr2 36,734,323 36,735,258 +

Or1j8 chr2 36,301,628 36,302,476 +

Or1n1b chr2 36,889,914 36,890,846 -

Or1n1 chr2 36,859,417 36,860,346 -

Or1j16 chr2 36,640,041 36,640,973 +

Or1j10 chr2 36,376,778 36,377,695 +

Or5c1 chr2 37,331,749 37,332,729 +

Or1j21 chr2 36,793,238 36,794,173 +

Or1ah3 chr2 37,270,545 37,271,384 +

Or1j13 chr2 36,479,190 36,480,128 -

Or1n2 chr2 36,906,948 36,907,898 +

Or1l4 chr2 37,201,243 37,202,178 +

Or1l8 chr2 36,927,183 36,928,112 -

Or12k7 chr2 37,068,307 37,069,257 +

Or1q1 chr2 36,996,812 36,997,735 +

Or1j11 chr2 36,421,400 36,422,326 +

Or1l4b chr2 37,146,118 37,147,134 +

Or1b1 chr2 37,104,698 37,105,648 -

Or1ak2 chr2 36,937,121 36,938,065 +

Or1v1-ps chr2 36,844,548 36,845,114 +

Symbol	Chromosome	Start	End	Strand
Or12k6-ps	chr2	37,019,242	37,020,202	-
Or1j14	chr2	36,527,414	36,528,349	+
Or12k8	chr2	37,084,781	37,085,746	-
Or1j19	chr2	36,786,527	36,787,465	+
Or1j18	chr2	36,734,323	36,735,258	+
Or1j8	chr2	36,301,628	36,302,476	+
Or1n1b	chr2	36,889,914	36,890,846	-
Or1n1	chr2	36,859,417	36,860,346	-
Or1j16	chr2	36,640,041	36,640,973	+
Or1j10	chr2	36,376,778	36,377,695	+
Or5c1	chr2	37,331,749	37,332,729	+
Or1j21	chr2	36,793,238	36,794,173	+
Or1ah3	chr2	37,270,545	37,271,384	+
Or1j13	chr2	36,479,190	36,480,128	-
Or1n2	chr2	36,906,948	36,907,898	+
Or1l4	chr2	37,201,243	37,202,178	+
Or1l8	chr2	36,927,183	36,928,112	-
Or12k7	chr2	37,068,307	37,069,257	+
Or1q1	chr2	36,996,812	36,997,735	+
Or1j11	chr2	36,421,400	36,422,326	+
Or1l4b	chr2	37,146,118	37,147,134	+
Or1b1	chr2	37,104,698	37,105,648	-
Or1ak2	chr2	36,937,121	36,938,065	+
Or1v1-ps	chr2	36,844,548	36,845,114	+

rat:
OR members in cluster chr3@16

Symbol Chromosome Start End Strand
Or12k8 chr3 21,130,503 21,131,492 -

Or1j13b chr3 15,688,992 15,689,927 +

Or1j12b chr3 16,183,322 16,184,254 +

Or1j4 chr3 20,878,701 20,879,636 +

Or1j19 chr3 16,311,578 16,312,516 +

Or1n1b chr3 20,913,671 20,914,603 -

Or1n1 chr3 20,882,324 20,883,259 -

Or1j16b chr3 15,788,481 15,789,704 +

Or5c1 chr3 21,363,285 21,364,265 +

Or1j13c chr3 16,287,047 16,287,991 +

Or1j15 chr3 16,039,249 16,040,169 +

Or1l4 chr3 21,276,213 21,277,145 +

Or1n2 chr3 20,965,751 20,966,701 +

Or1l4b chr3 21,208,600 21,209,520 +

Or1b1 chr3 21,147,947 21,148,915 -

Or1j15b chr3 15,895,191 15,896,117 +

Or1j14 chr3 16,001,207 16,002,142 +

Or1j1 chr3 20,852,770 20,853,708 -

Or1u2-ps chr3 15,617,755 15,618,818 +

Or1j16 chr3 16,117,228 16,118,163 +

Or1j10 chr3 15,856,289 15,857,209 +

Or1af1 chr3 21,292,026 21,292,952 +

Or1v2-ps chr3 20,866,965 20,867,928 +

Or12k7b chr3 21,060,120 21,061,070 -

Or1j21 chr3 16,318,429 16,319,367 +

Or1j8b chr3 15,749,691 15,750,626 +

Or1j20 chr3 20,893,187 20,894,131 +

Or1j13 chr3 15,930,518 15,931,453 +

Or1j12 chr3 16,241,573 16,242,508 +

Or1l8 chr3 20,981,649 20,982,578 -

Or1j24-ps chr3 16,163,324 16,164,444 +

Or1j8-ps chr3 15,643,829 15,644,963 +

Or12k7 chr3 21,114,856 21,115,839 +

Or1q1 chr3 21,016,266 21,017,189 +

Or1ak2 chr3 20,993,205 20,994,149 +

Or1j22 chr3 15,823,220 15,824,146 +

Or12k5 chr3 21,026,958 21,027,947 -

Symbol	Chromosome	Start	End	Strand
Or12k8	chr3	21,130,503	21,131,492	-
Or1j13b	chr3	15,688,992	15,689,927	+
Or1j12b	chr3	16,183,322	16,184,254	+
Or1j4	chr3	20,878,701	20,879,636	+
Or1j19	chr3	16,311,578	16,312,516	+
Or1n1b	chr3	20,913,671	20,914,603	-
Or1n1	chr3	20,882,324	20,883,259	-
Or1j16b	chr3	15,788,481	15,789,704	+
Or5c1	chr3	21,363,285	21,364,265	+
Or1j13c	chr3	16,287,047	16,287,991	+
Or1j15	chr3	16,039,249	16,040,169	+
Or1l4	chr3	21,276,213	21,277,145	+
Or1n2	chr3	20,965,751	20,966,701	+
Or1l4b	chr3	21,208,600	21,209,520	+
Or1b1	chr3	21,147,947	21,148,915	-
Or1j15b	chr3	15,895,191	15,896,117	+
Or1j14	chr3	16,001,207	16,002,142	+
Or1j1	chr3	20,852,770	20,853,708	-
Or1u2-ps	chr3	15,617,755	15,618,818	+
Or1j16	chr3	16,117,228	16,118,163	+
Or1j10	chr3	15,856,289	15,857,209	+
Or1af1	chr3	21,292,026	21,292,952	+
Or1v2-ps	chr3	20,866,965	20,867,928	+
Or12k7b	chr3	21,060,120	21,061,070	-
Or1j21	chr3	16,318,429	16,319,367	+
Or1j8b	chr3	15,749,691	15,750,626	+
Or1j20	chr3	20,893,187	20,894,131	+
Or1j13	chr3	15,930,518	15,931,453	+
Or1j12	chr3	16,241,573	16,242,508	+
Or1l8	chr3	20,981,649	20,982,578	-
Or1j24-ps	chr3	16,163,324	16,164,444	+
Or1j8-ps	chr3	15,643,829	15,644,963	+
Or12k7	chr3	21,114,856	21,115,839	+
Or1q1	chr3	21,016,266	21,017,189	+
Or1ak2	chr3	20,993,205	20,994,149	+
Or1j22	chr3	15,823,220	15,824,146	+
Or12k5	chr3	21,026,958	21,027,947	-

dog:
OR members in cluster chr9@52.6

Symbol Chromosome Start End Strand
OR1L8 chr9 60118039 60118980 +

OR1AF1 chr9 60006117 60007043 -

OR1J6P chr9 60087552 60088507 -

OR1L6 chr9 60061043 60061972 -

OR1L6BP chr9 60043585 60044514 -

OR1K1 chr9 59969868 59970815 -

OR1L11P chr9 60145753 60146731 +

OR5C1 chr9 59984665 59985621 -

Symbol	Chromosome	Start	End	Strand
OR1L8	chr9	60118039	60118980	+
OR1AF1	chr9	60006117	60007043	-
OR1J6P	chr9	60087552	60088507	-
OR1L6	chr9	60061043	60061972	-
OR1L6BP	chr9	60043585	60044514	-
OR1K1	chr9	59969868	59970815	-
OR1L11P	chr9	60145753	60146731	+
OR5C1	chr9	59984665	59985621	-

opossum:
OR members in cluster s15087@1.4

Symbol Chromosome Start End Strand
Modo-OR1K2 scaffold_15087 1104294 1105215 -

Modo-OR5C1 scaffold_15087 1126021 1126981 -

Modo-OR1N4 scaffold_15087 1491535 1492471 -

Modo-OR1N2 scaffold_15087 1453509 1454451 +

Modo-OR12K2 scaffold_15087 1307492 1308482 -

Modo-OR1AF2P scaffold_15087 1194307 1194827 -

Modo-OR1B1 scaffold_15087 1597827 1598778 -

Modo-OR1AM1P scaffold_15087 1520346 1521276 +

Modo-OR1AH1 scaffold_15087 1156536 1157475 -

Modo-OR12K3 scaffold_15087 1618796 1619720 -

Modo-OR1L6 scaffold_15087 1213989 1214928 -

Modo-OR1J2 scaffold_15087 1398076 1399018 +

Modo-OR1AK1 scaffold_15087 1477408 1478344 +

Modo-OR1B2 scaffold_15087 1541416 1542382 -

Modo-OR1J7 scaffold_15087 1439861 1440818 +

Modo-OR12K1 scaffold_15087 1259452 1260442 -

Modo-OR1Q2 scaffold_15087 1363445 1364387 -

Modo-OR1AH2 scaffold_15087 1186590 1187529 -

Symbol	Chromosome	Start	End	Strand
Modo-OR1K2	scaffold_15087	1104294	1105215	-
Modo-OR5C1	scaffold_15087	1126021	1126981	-
Modo-OR1N4	scaffold_15087	1491535	1492471	-
Modo-OR1N2	scaffold_15087	1453509	1454451	+
Modo-OR12K2	scaffold_15087	1307492	1308482	-
Modo-OR1AF2P	scaffold_15087	1194307	1194827	-
Modo-OR1B1	scaffold_15087	1597827	1598778	-
Modo-OR1AM1P	scaffold_15087	1520346	1521276	+
Modo-OR1AH1	scaffold_15087	1156536	1157475	-
Modo-OR12K3	scaffold_15087	1618796	1619720	-
Modo-OR1L6	scaffold_15087	1213989	1214928	-
Modo-OR1J2	scaffold_15087	1398076	1399018	+
Modo-OR1AK1	scaffold_15087	1477408	1478344	+
Modo-OR1B2	scaffold_15087	1541416	1542382	-
Modo-OR1J7	scaffold_15087	1439861	1440818	+
Modo-OR12K1	scaffold_15087	1259452	1260442	-
Modo-OR1Q2	scaffold_15087	1363445	1364387	-
Modo-OR1AH2	scaffold_15087	1186590	1187529	-

List of all CLICs
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