HORDE: Information for CLIC#22

Information for CLIC#22


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#22 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr10@45.1 chr6@117 chr7@134.8 chr1@200.6 chr4@153.1 chr28@5.3 s13575@1.4
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr10@45.1

SymbolChromosomeStartEndStrand
OR13A1 10 45303439 45304365 -
OR6D1P 10 45258308 45259120 +

mouse:
OR members in cluster chr6@117

SymbolChromosomeStartEndStrand
Or6d14 chr6 116,556,427 116,557,386 +
Or6d12 chr6 116,515,779 116,516,759 +
Or6d15 chr6 116,582,015 116,582,944 -
Or6d13 chr6 116,540,359 116,541,435 +
Or13a1 chr6 116,493,611 116,494,537 +

OR members in cluster chr7@134.8

SymbolChromosomeStartEndStrand
Or13a26 chr7 140,704,253 140,705,188 +
Or6ae1 chr7 140,162,013 140,162,948 -
Or12j3 chr7 140,372,688 140,373,608 -
Or13a21 chr7 140,418,845 140,419,771 -
Or12j5 chr7 140,503,537 140,504,457 -
Or13a19 chr7 140,322,701 140,323,627 +
Or13a27 chr7 140,345,055 140,345,987 -
Or13a18 chr7 140,610,168 140,611,121 +
Or13a20 chr7 140,651,981 140,652,916 +
Or13a22 chr7 140,492,640 140,493,575 +
Or13v11 chr7 140,400,133 140,401,044 -
Or13a17 chr7 140,690,907 140,691,839 +
Or12j4 chr7 140,466,203 140,467,162 +
Or13a25 chr7 140,667,289 140,668,245 +
Or12j2 chr7 140,335,864 140,336,778 +
Or13a28 chr7 140,637,703 140,638,635 +
Or6f2 chr7 140,176,104 140,177,054 +

rat:
OR members in cluster chr1@200.6

SymbolChromosomeStartEndStrand
Or13a26 chr1 213,451,715 213,452,650 +
Or13a27e chr1 213,334,956 213,335,885 +
Or6ae1 chr1 212,632,369 212,633,304 -
Or12j3 chr1 212,940,367 212,941,287 -
Or13a26b chr1 213,426,787 213,427,776 +
Or13a27c chr1 213,131,630 213,132,559 +
Or13a18b chr1 213,258,684 213,259,613 +
Or12j5 chr1 213,094,524 213,095,444 -
Or13a27d chr1 213,347,974 213,348,903 +
Or12j2b-ps chr1 212,990,747 212,991,658 -
Or13a19b chr1 212,836,278 212,837,204 +
Or13a27 chr1 212,911,270 212,912,199 -
Or13a18 chr1 213,169,484 213,170,416 +
Or6b13 chr1 212,678,649 212,679,602 -
Or13a23 chr1 213,194,827 213,195,756 +
Or13a25 chr1 213,404,397 213,405,332 +
Or13o2-ps chr1 212,864,002 212,864,649 +
Or12j4 chr1 213,040,024 213,040,944 +
Or13a19c chr1 213,011,281 213,012,264 -
Or13a18c chr1 213,287,512 213,288,441 +
Or13a27b chr1 213,070,522 213,071,457 +
Or12j2 chr1 212,885,464 212,886,381 +
Or13a28 chr1 213,374,892 213,375,824 +

OR members in cluster chr4@153.1

SymbolChromosomeStartEndStrand
Or6d15b chr4 148,710,901 148,711,830 -
Or6d12 chr4 148,519,816 148,520,796 +
Or6d15 chr4 148,690,069 148,690,998 -
Or6d13b chr4 148,544,958 148,545,938 +
Or13a1 chr4 148,476,943 148,477,866 +
Or6d13c chr4 148,623,713 148,624,750 +
Or6d12b chr4 148,589,144 148,590,124 +
Or6d14 chr4 148,664,950 148,665,909 +
Or6d12c chr4 148,649,223 148,650,203 +
Or6d13 chr4 148,567,386 148,568,366 +

dog:
OR members in cluster chr28@5.3

SymbolChromosomeStartEndStrand
OR6D4P chr28 2332024 2332752 -
OR6D7 chr28 2295451 2296401 +
OR6D6 chr28 2281336 2282322 +
OR13A1 chr28 2260719 2261702 -
OR6D5 chr28 2384754 2385731 -

opossum:
OR members in cluster s13575@1.4

SymbolChromosomeStartEndStrand
Modo-OR131P scaffold_13575 1473943 1474674 -
Modo-OR13A6 scaffold_13575 1480083 1481019 -
Modo-OR13A9P scaffold_13575 1391368 1392288 -
Modo-OR13A15 scaffold_13575 1372813 1373740 -
Modo-OR6D10 scaffold_13575 1028541 1029480 -
Modo-OR13V5P scaffold_13575 1510623 1511546 -
Modo-OR13A11P scaffold_13575 1441307 1442240 -
Modo-OR13V10 scaffold_13575 1541768 1542695 -
Modo-OR13A8P scaffold_13575 1271365 1272294 -
Modo-OR6D11P scaffold_13575 987748 988205 -
Modo-OR13V4 scaffold_13575 1236405 1237332 +
Modo-OR6D8 scaffold_13575 1019238 1020195 +
Modo-OR6F2 scaffold_13575 1840358 1841282 -
Modo-OR13AH1P scaffold_13575 1502956 1503864 -
Modo-OR13V2 scaffold_13575 1567686 1568646 -
Modo-OR13A2 scaffold_13575 1037950 1038874 -
Modo-OR13A5P scaffold_13575 1429966 1430894 -
Modo-OR13V7P scaffold_13575 1608483 1609420 -
Modo-OR13A10P scaffold_13575 1255892 1256820 -
Modo-OR13V9 scaffold_13575 1492001 1492928 -
Modo-OR6D9P scaffold_13575 986746 987184 -
Modo-OR13A13P scaffold_13575 1326612 1327541 -
Modo-OR13A14P scaffold_13575 1335824 1336741 -
Modo-OR13V3 scaffold_13575 1656346 1657273 -
Modo-OR6B13 scaffold_13575 1787102 1788056 +
Modo-OR13V8P scaffold_13575 1633160 1634087 +
Modo-OR13AL1P scaffold_13575 1487408 1488295 -
Modo-OR13AH2P scaffold_13575 1640789 1641650 +
Modo-OR13A7 scaffold_13575 1459188 1460124 -
Modo-OR6AE1 scaffold_13575 1825099 1826077 +
Modo-OR13V6P scaffold_13575 1588721 1589700 -
Modo-OR13A4 scaffold_13575 1355432 1356359 -
Modo-OR13V1 scaffold_13575 1670307 1671234 -
Modo-OR13A12P scaffold_13575 1302958 1303893 -
Modo-OR6AK1P scaffold_13575 1005576 1006145 -
Modo-OR13A3 scaffold_13575 1057154 1058084 -


List of all CLICs
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