HORDE: Information for CLIC#24

Information for CLIC#24

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#24 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr11@6.8 chr7@100.9 chr1@164.2 chr21@32.6 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr11@6.8

SymbolChromosomeStartEndStrand
OR10A2 11 6869755 6870663 +
OR10A5 11 6845683 6846633 +
OR2D2 11 6891577 6892500 -
OR10A4 11 6876621 6877592 +
OR2AG2 11 6768010 6768957 -
OR6A2 11 6794728 6795708 -
OR2D3 11 6921050 6921991 +
OR2AG1 11 6785038 6785985 +

mouse:
OR members in cluster chr7@100.9

SymbolChromosomeStartEndStrand
Or10a2 chr7 107,073,830 107,074,780 +
Or6z6 chr7 6,487,916 6,488,872 -
Or2ag2b chr7 106,818,085 106,819,032 +
Or6b6 chr7 106,971,401 106,972,342 -
Or2d3c chr7 106,926,537 106,927,562 -
Or2ag12 chr7 106,677,537 106,678,484 -
Or2ag16 chr7 106,752,454 106,753,386 -
Or2d36 chr7 107,147,318 107,148,259 +
Or2ag1 chr7 106,873,296 106,874,243 -
Or2ag15 chr7 106,740,985 106,741,932 -
Or2d4 chr7 106,944,070 106,944,999 -
Or10al8 chr17 37,725,999 37,726,988 +
Or2ag1b chr7 106,688,788 106,689,729 -
Or2ag19 chr7 106,844,613 106,845,569 +
Or13n4 chr7 106,823,571 106,824,524 -
Or2ag13 chr7 106,713,735 106,714,679 -
Or2ag18 chr7 106,805,513 106,806,460 -
Or2d2 chr7 107,128,447 107,129,391 -
Or10a4 chr7 107,097,449 107,098,411 +

rat:
OR members in cluster chr1@164.2

SymbolChromosomeStartEndStrand
Or10a2 chr1 171,179,037 171,179,987 +
Or2d3 chr1 170,932,740 170,933,660 -
Or6b9 chr1 171,027,796 171,028,743 -
Or6i2-ps chr1 171,055,767 171,056,597 -
Or2ag2b chr1 170,796,232 170,797,218 +
Or2d2b chr1 171,195,675 171,196,619 -
Or2ag21-ps chr9 3,989,423 3,990,025 +
Or10a5 chr1 148,862,493 148,863,443 +
Or6b6 chr1 171,044,478 171,045,419 -
Or2d3c chr1 170,988,314 170,989,234 -
Or2ag16b chr2 4,800,365 4,801,309 +
Or2ag16 chr2 4,858,907 4,859,851 +
Or2ag19b chr2 4,820,016 4,820,963 +
Or2d36 chr1 171,274,305 171,275,246 +
Or2ag20 chr1 170,887,363 170,888,307 +
Or2ag17 chr1 170,762,430 170,763,377 -
Or2ag1 chr1 170,915,112 170,916,059 -
Or2d4 chr1 171,008,741 171,009,670 -
Or2d36b chr1 170,693,931 170,694,872 -
Or2ag19 chr1 170,863,882 170,864,829 +
Or13n4 chr1 170,800,637 170,801,560 -
Or10a5c-ps chr1 171,129,202 171,129,960 +
Or2ag13 chr1 173,179,801 173,180,826 -
Or13n4b chr1 170,840,440 170,841,363 -
Or2d2 chr1 171,208,476 171,209,420 -
Or2ag18 chr1 170,742,785 170,743,732 -
Or2ag17b chr1 170,723,193 170,724,071 -
Or10a4 chr1 171,188,133 171,189,077 +
Or2ag2 chr1 170,927,010 170,927,972 -

dog:
OR members in cluster chr21@32.6

SymbolChromosomeStartEndStrand
OR2D4 chr21 30181583 30182503 -
OR2D2DP chr21 30486479 30487410 -
OR10A5 chr21 30311174 30312328 +
OR2D3H chr21 30393696 30394562 +
OR2D2 chr21 30613538 30614482 -
OR10A5E chr21 30470105 30471055 +
OR2D2C chr21 30347012 30347944 -
OR2AG1D chr21 30150104 30151033 +
OR2D37 chr21 30082563 30083483 +
OR2AG1 chr21 30093293 30094240 +
OR10A5F chr21 30458180 30459130 +
OR10A5D chr21 30332001 30332951 +
OR2D3D chr21 30639803 30640744 +
OR2D3G chr21 30160860 30161789 -
OR6B9 chr21 30222255 30223208 -
OR2D3E chr21 30550413 30551354 +
OR10A4 chr21 30343737 30344708 +
OR2D3 chr21 30508243 30509184 +
OR2AG2 chr21 30140008 30140955 +
OR6A2 chr21 30254197 30255177 -
OR2D3F chr21 30571208 30572149 +
OR6B6 chr21 30243166 30244107 -

List of all CLICs
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