HORDE: Information for CLIC#25

Information for CLIC#25

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#25 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr11@7.8 chr7@102.3 chr1@166 chr21@33.7 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr11@7.8

SymbolChromosomeStartEndStrand
OR10A3 11 7938579 7939520 -
OR5P4P 11 7745990 7746909 +
OR10A6 11 7927721 7928662 -
OR10AB1P 11 7728400 7729337 +
OR5P2 11 7795977 7796942 -
OR5P1P 11 7772893 7773814 -
OR5P3 11 7825040 7825972 -
OR5E1P 11 7848700 7849632 +

mouse:
OR members in cluster chr7@102.3

SymbolChromosomeStartEndStrand
Or5p53 chr7 107,933,522 107,934,451 +
Or10a47 chr7 108,713,355 108,714,332 +
Or5p69 chr7 108,367,492 108,368,433 +
Or5e1 chr7 108,754,858 108,755,784 +
Or5p72 chr7 108,422,573 108,423,514 +
Or5p79 chr7 108,621,814 108,622,761 +
Or10a49 chr7 108,868,211 108,869,230 -
Or5p78 chr7 108,612,309 108,613,250 +
Or10a50 chr7 108,893,464 108,894,405 -
Or10a3 chr7 108,880,606 108,881,604 -
Or10a48 chr7 108,825,068 108,825,997 -
Or5p80 chr7 108,629,994 108,630,923 +
Or5p52 chr7 107,902,719 107,903,648 +
Or5p76 chr7 108,523,007 108,523,948 -
Or5p82 chr7 107,861,085 107,861,999 -
Or10a3b chr7 108,845,067 108,846,008 -
Or7r1 chrX 74,570,654 74,571,574 -

rat:
OR members in cluster chr1@166

SymbolChromosomeStartEndStrand
Or5p81 chr1 172,892,134 172,893,075 +
Or5p60 chr1 172,464,478 172,465,446 -
Or8i6-ps chr1 172,053,166 172,053,804 +
Or5p6 chr1 172,214,789 172,215,730 -
Or5p69 chr1 172,792,874 172,793,815 +
Or5p60c chr1 172,394,910 172,395,872 -
Or5p78b-ps chrUn_AABR07024042v1 32,080 33,207 +
Or5p66 chr1 172,566,908 172,567,846 -
Or5p79 chr1 172,813,394 172,814,335 +
Or5p73 chr1 172,664,300 172,665,244 -
Or5p59 chr1 172,348,583 172,349,527 +
Or5p76b chr1 172,942,912 172,943,853 -
Or5p5 chr1 172,075,203 172,076,186 -
Or10a3c chr1 173,128,097 173,129,074 -
Or5p69b chr1 172,728,264 172,729,139 +
Or5p60b chr1 172,485,303 172,486,268 -
Or5p68 chr1 172,615,680 172,616,633 -
Or5p4 chr1 172,264,473 172,265,408 +
Or10ab4 chr1 172,242,504 172,243,484 +
Or10a48b-ps chr1 173,423,880 173,424,527 -
Or5p53 chr1 172,129,514 172,130,443 +
Or5p84-ps chr1 172,289,594 172,290,791 +
Or5p56 chr1 172,157,739 172,158,668 +
Or5p61-ps chr1 172,511,099 172,512,242 -
Or5p72 chr1 172,625,352 172,626,293 +
Or5p56b-ps chr1 172,186,344 172,187,476 +
Or5p83-ps chr1 172,714,351 172,715,077 +
Or5p75-ps chr1 172,769,796 172,770,940 +
Or10a49 chr1 173,442,165 173,443,226 -
Or5p50 chr1 172,058,211 172,059,221 -
Or5p5b chr1 172,051,215 172,052,150 +
Or5p78c chr1 172,752,416 172,753,357 +
Or5p1 chr1 172,599,610 172,600,542 +
Or5p78 chr1 172,807,296 172,808,330 +
Or10a48 chr1 173,392,458 173,393,390 -
Or10a3 chr1 173,455,511 173,456,530 -
Or8af1-ps chr1 172,605,498 172,606,446 -
Or5p80 chr1 172,822,444 172,823,576 +
Or5p6b chr1 172,283,255 172,284,196 +
Or5p76 chr1 173,123,997 173,124,942 -
Or5p60d chr1 172,551,158 172,552,099 -
Or5p66b chr1 172,368,574 172,369,515 -

dog:
OR members in cluster chr21@33.7

SymbolChromosomeStartEndStrand
OR5P4 chr21 31368594 31369529 +
OR10A3 chr21 31492262 31493203 -
OR5E1 chr21 31426028 31426975 +
OR10A6 chr21 31460895 31461974 -
OR10AB3 chr21 31395182 31396144 +
OR5P6 chr21 31404663 31405604 -
OR10AB2 chr21 31378585 31379550 -
OR10A3E chr21 31472703 31473644 -
OR5P5 chr21 31359709 31360644 +

List of all CLICs
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