Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.
Additional details can be found at:
Genome Biology, 2006 Oct 1;7(10):R88
Human | Mouse | Rat | Dog | Opossum |
---|---|---|---|---|
chr11@57.7 chr11@59.1 | chr19@12.1 | chr1@215.2 chr1@216.5 | chr18@47.9 chr18@48.7 | s12795@1.2 s12795@2.8 s12795@3.4 |
human:
OR members in cluster chr11@57.7
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR5BL1P | 11 | 58171089 | 58171721 | + | OR6Q1 | 11 | 58030953 | 58031903 | + | OR10Q2P | 11 | 58291829 | 58292771 | - | OR1S1 | 11 | 58214784 | 58215719 | + | OR5B19P | 11 | 58343813 | 58344670 | - | OR5AZ1P | 11 | 57917302 | 57918230 | - | OR5B17 | 11 | 58358128 | 58359069 | - | OR10Q1 | 11 | 58227919 | 58228875 | - | OR1S2 | 11 | 58203207 | 58204142 | - | OR5B12 | 11 | 58439210 | 58440151 | - | OR5BD1P | 11 | 57945555 | 57946471 | - | OR9Q1 | 11 | 58179445 | 58180374 | + | OR9L1P | 11 | 58077349 | 58078605 | - | OR5B15P | 11 | 58387571 | 58388486 | - | OR5BA1P | 11 | 57866302 | 57867280 | - | OR5BC1P | 11 | 58317640 | 58318473 | - | OR5B3 | 11 | 58402468 | 58403409 | - | OR9Q2 | 11 | 58190491 | 58191432 | + | OR10W1 | 11 | 58266944 | 58267858 | - | OR5B10P | 11 | 58348988 | 58349628 | - | OR5B21 | 11 | 58507179 | 58508105 | - | OR9I1 | 11 | 58118503 | 58119444 | - | OR9I3P | 11 | 58108720 | 58109661 | - | OR5B2 | 11 | 58422335 | 58423261 | - | OR5B1P | 11 | 58365830 | 58366763 | - | OR9I2P | 11 | 58144426 | 58145421 | + |
OR members in cluster chr11@59.1
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR4D11 | 11 | 59503576 | 59504508 | + | OR5BB1P | 11 | 59391353 | 59392291 | - | OR5AN2P | 11 | 59309642 | 59310588 | - | OR5A2 | 11 | 59421982 | 59422953 | - | OR10V2P | 11 | 59748811 | 59749574 | + | OR4D8P | 11 | 59491652 | 59492610 | + | OR10V1 | 11 | 59712919 | 59713845 | - | OR4D6 | 11 | 59456961 | 59457902 | + | OR10Y1P | 11 | 59728519 | 59729492 | + | OR5BR1P | 11 | 59332756 | 59334085 | - | OR10V3P | 11 | 59741325 | 59742049 | + | OR4D7P | 11 | 59531697 | 59532710 | + | OR4D10 | 11 | 59477430 | 59478362 | + | OR4D9 | 11 | 59514913 | 59515854 | + | OR5AN1 | 11 | 59364459 | 59365391 | + | OR5A1 | 11 | 59443169 | 59444113 | + |
mouse:
OR members in cluster chr19@12.1
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or5a3 | chr19 | 12,422,311 | 12,423,264 | + | Or10q1b | chr19 | 13,704,790 | 13,705,785 | + | Or4d10c | chr19 | 12,087,858 | 12,088,790 | - | Or10v1 | chr19 | 11,896,023 | 11,896,949 | + | Or5a21 | chr19 | 12,332,898 | 12,333,854 | - | Or4d11 | chr19 | 12,035,811 | 12,036,740 | - | Or10v9 | chr19 | 11,854,998 | 11,856,032 | - | Or5bb12 | chr19 | 12,166,189 | 12,167,055 | - | Or5an1b | chr19 | 12,321,890 | 12,322,825 | - | Or10w3 | chr19 | 13,726,224 | 13,727,210 | + | Or4d10 | chr19 | 12,073,698 | 12,074,630 | - | Or5an9 | chr19 | 12,209,568 | 12,210,503 | + | Or5an6 | chr19 | 12,394,265 | 12,395,209 | + | Or5u1-ps | chr19 | 13,158,191 | 13,159,313 | + | Or5an1c | chr19 | 12,240,724 | 12,241,659 | - | Or10q12 | chr19 | 13,768,197 | 13,769,300 | + | Or5b101 | chr19 | 13,027,407 | 13,028,327 | - | Or5an10 | chr19 | 12,298,186 | 12,299,130 | - | Or5b12b | chr19 | 12,883,883 | 12,884,824 | + | Or9i16 | chr19 | 13,887,264 | 13,888,208 | - | Or4d10b | chr19 | 12,058,812 | 12,059,813 | - | Or9i1 | chr19 | 13,861,795 | 13,862,742 | + | Or5an1 | chr19 | 12,283,050 | 12,283,985 | + | Or10v5 | chr19 | 11,828,080 | 11,829,024 | - | Or1s2 | chr19 | 13,780,614 | 13,781,564 | + | Or5b95 | chr19 | 12,680,110 | 12,681,045 | + | Or5a1 | chr19 | 12,119,724 | 12,120,674 | - | Or4d6 | chr19 | 12,108,603 | 12,109,544 | - | Or9i2 | chr19 | 13,838,227 | 13,839,171 | - | Or9i14 | chr19 | 13,814,647 | 13,815,588 | - | Or5an11 | chr19 | 12,268,232 | 12,269,167 | + | Or4z4 | chr19 | 12,098,705 | 12,099,637 | - | Or9q2 | chr19 | 13,794,668 | 13,795,609 | - | Or10q3 | chr19 | 11,870,186 | 11,871,214 | - | Or5b94 | chr19 | 12,674,207 | 12,675,142 | + | Or5b99 | chr19 | 12,998,988 | 12,999,917 | + | Or5bc4-ps | chr19 | 13,462,690 | 13,463,635 | - | Or5b12 | chr19 | 12,919,366 | 12,920,307 | - |
rat:
OR members in cluster chr1@215.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or5an1 | chr1 | 228,628,274 | 228,629,209 | + | Or5q2-ps | chr1 | 229,454,368 | 229,455,082 | + | Or4d10c | chr1 | 228,523,507 | 228,524,439 | - | Or10v1 | chr1 | 228,317,412 | 228,318,338 | + | Or5a21 | chr1 | 229,461,127 | 229,462,083 | + | Or4d11 | chr1 | 228,474,343 | 228,475,272 | - | Or5an1b | chr1 | 229,443,102 | 229,444,040 | + | Or5bb12 | chrUn_KL568473v1 | 24,000 | 24,965 | - | Or5a3-ps | chr1 | 228,684,561 | 228,685,361 | + | Or5a1 | chr1 | 228,557,643 | 228,558,593 | - | Or4d6 | chr1 | 228,545,916 | 228,546,857 | - | Or10v9b | chr1 | 228,262,245 | 228,263,198 | - | Or4d10 | chr1 | 228,504,148 | 228,505,080 | - | Or5an9 | chrUn_KL568468v1 | 108,681 | 109,631 | + | Or5an6 | chr1 | 229,416,489 | 229,417,448 | + | Or4z7-ps | chr1 | 228,457,117 | 228,457,605 | - | Or5an10-ps | chr1 | 229,480,173 | 229,481,119 | + | Or5an12-ps | chr1 | 229,399,414 | 229,400,494 | + | Or4z4 | chr1 | 228,537,142 | 228,538,074 | - |
OR members in cluster chr1@216.5
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or9i1b | chr1 | 230,811,800 | 230,812,747 | + | Or5ax1-ps | chr1 | 230,391,144 | 230,391,841 | + | Or5b21 | chr1 | 229,722,609 | 229,723,724 | + | Or5b124c-ps | chr1 | 230,415,322 | 230,415,849 | + | Or5b124b-ps | chr1 | 230,351,873 | 230,353,013 | + | Or5b3 | chr1 | 230,268,991 | 230,269,926 | + | Or5b107 | chr1 | 230,160,365 | 230,161,294 | + | Or9i13 | chr1 | 230,664,470 | 230,665,429 | - | Or5b116b | chr1 | 230,030,914 | 230,031,864 | + | Or5b100 | chr1 | 229,877,560 | 229,878,480 | + | Or9i1-ps | chr1 | 230,703,607 | 230,704,754 | + | Or10w3 | chr1 | 230,553,486 | 230,554,433 | + | Or5b105 | chr1 | 230,011,125 | 230,012,045 | + | Or10q12 | chr1 | 230,604,386 | 230,605,342 | + | Or5aa4-ps | chr1 | 230,022,371 | 230,022,855 | - | Or5b116 | chr1 | 230,305,923 | 230,306,864 | + | Or5b107b | chr1 | 229,991,278 | 229,992,132 | + | Or5b12b | chr1 | 229,755,649 | 229,756,590 | + | Or9i16 | chr1 | 230,686,213 | 230,687,157 | - | Or5b123 | chr1 | 230,377,079 | 230,378,011 | + | Or10q1 | chr1 | 230,576,298 | 230,577,251 | + | Or5b127-ps | chr1 | 230,093,370 | 230,094,527 | - | Or1s2 | chr1 | 230,628,996 | 230,629,940 | + | Or5b95 | chr1 | 229,107,911 | 229,108,846 | + | Or5b104b | chr1 | 230,078,987 | 230,079,928 | - | Or5b97 | chr1 | 229,783,168 | 229,784,288 | - | Or5b24 | chr1 | 229,824,542 | 229,825,474 | + | Or5b130-ps | chr1 | 230,433,587 | 230,433,958 | + | Or5b124 | chr1 | 230,450,529 | 230,451,467 | + | Or5b126-ps | chr1 | 229,961,147 | 229,962,278 | - | Or5b104 | chr1 | 229,927,017 | 229,927,991 | - | Or9i2 | chr1 | 230,765,571 | 230,766,515 | - | Or10w1 | chr1 | 230,521,416 | 230,522,432 | + | Or9i14 | chr1 | 230,729,013 | 230,729,978 | - | Or5b102 | chr1 | 229,889,771 | 229,890,691 | + | Or5b128-ps | chr1 | 230,035,630 | 230,036,711 | + | Or5b106 | chr1 | 230,114,431 | 230,115,342 | - | Or5ay1-ps | chr1 | 230,192,323 | 230,193,396 | + | Or9q2 | chr1 | 230,648,997 | 230,649,938 | - | Or5b123b | chr1 | 230,056,710 | 230,057,654 | + | Or9q1 | chr1 | 230,674,775 | 230,675,707 | - | Or5b99 | chr1 | 229,849,892 | 229,850,815 | + | Or5b12 | chr1 | 229,803,670 | 229,804,614 | - | Or5b96 | chr1 | 229,764,229 | 229,765,146 | - |
dog:
OR members in cluster chr18@47.9
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR4D11 | chr18 | 37235629 | 37236561 | - | OR5AN5P | chr18 | 37362565 | 37363518 | + | OR10V10 | chr18 | 37052457 | 37053482 | - | OR5A2 | chr18 | 37313831 | 37314877 | + | OR5A3 | chr18 | 37513461 | 37514507 | + | OR5AN6 | chr18 | 37496829 | 37497782 | + | OR5AN1E | chr18 | 37358094 | 37359029 | + | OR10V1 | chr18 | 37071666 | 37072592 | + | OR10V4 | chr18 | 37099565 | 37100500 | + | OR4D6 | chr18 | 37275089 | 37276021 | - | OR4D9C | chr18 | 37249664 | 37250596 | - | OR5AN2 | chr18 | 37474234 | 37475205 | + | OR4D9B | chr18 | 37266589 | 37267581 | - | OR10V5 | chr18 | 37037166 | 37038191 | - | OR5AN1 | chr18 | 37329690 | 37330625 | + | OR5A1 | chr18 | 37290624 | 37291580 | - | OR4D9 | chr18 | 37225147 | 37226079 | - |
OR members in cluster chr18@48.7
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR6Q1 | chr18 | 38284205 | 38285155 | - | OR5B35 | chr18 | 38058133 | 38059074 | + | OR5B24 | chr18 | 37925044 | 37925979 | + | OR9I4P | chr18 | 38253465 | 38254357 | + | OR5AZ2 | chr18 | 38325710 | 38326594 | + | OR10Q2 | chr18 | 38098986 | 38099942 | + | OR5B2B | chr18 | 37968095 | 37969036 | - | OR9Q4 | chr18 | 38162450 | 38163382 | - | OR10Q1 | chr18 | 38127332 | 38128288 | + | OR5B31 | chr18 | 38041418 | 38042362 | + | OR5B12 | chr18 | 37892221 | 37893162 | + | OR9I2 | chr18 | 38218146 | 38219126 | - | OR5BA1 | chr18 | 38374156 | 38375112 | + | OR5B32 | chr18 | 38085574 | 38086524 | + | OR5B3B | chr18 | 37955781 | 37956716 | - | OR1S1P | chr18 | 38141622 | 38142556 | + | OR9Q3 | chr18 | 38151625 | 38152626 | - | OR5B3 | chr18 | 38021824 | 38022759 | + | OR9I1 | chr18 | 38240309 | 38241250 | + | OR5B21 | chr18 | 37867192 | 37868139 | + | OR5B2 | chr18 | 37994324 | 37995265 | + | OR5B33 | chr18 | 38073624 | 38074565 | + |
opossum:
OR members in cluster s12795@1.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR5B77P | scaffold_12795 | 1080064 | 1080619 | - | Modo-OR5B62 | scaffold_12795 | 1782885 | 1783515 | - | Modo-OR10Q1 | scaffold_12795 | 759706 | 760666 | - | Modo-OR5B42P | scaffold_12795 | 1909525 | 1910453 | - | Modo-OR9I8P | scaffold_12795 | 624700 | 625645 | + | Modo-OR5B68P | scaffold_12795 | 1732505 | 1733330 | - | Modo-OR5B59 | scaffold_12795 | 1550960 | 1551917 | - | Modo-OR5B39P | scaffold_12795 | 1231931 | 1232874 | - | Modo-OR5B80P | scaffold_12795 | 1250405 | 1251332 | - | Modo-OR5B60P | scaffold_12795 | 1144250 | 1145185 | - | Modo-OR5B85P | scaffold_12795 | 1720442 | 1721383 | - | Modo-OR5B67P | scaffold_12795 | 571647 | 572563 | - | Modo-OR5B65P | scaffold_12795 | 1501540 | 1502481 | - | Modo-OR10W2P | scaffold_12795 | 740967 | 741910 | - | Modo-OR5B34 | scaffold_12795 | 1114094 | 1115048 | - | Modo-OR5B61P | scaffold_12795 | 1178563 | 1179499 | + | Modo-OR5B79P | scaffold_12795 | 1360579 | 1361002 | - | Modo-OR1S3P | scaffold_12795 | 577089 | 578026 | - | Modo-OR5B81P | scaffold_12795 | 1291999 | 1292942 | - | Modo-OR5B25 | scaffold_12795 | 1942025 | 1942925 | - | Modo-OR5B52 | scaffold_12795 | 1465760 | 1466711 | - | Modo-OR6Q2 | scaffold_12795 | 449378 | 450329 | + | Modo-OR5B45P | scaffold_12795 | 1661298 | 1662259 | - | Modo-OR5B48P | scaffold_12795 | 1923083 | 1924023 | - | Modo-OR5B86 | scaffold_12795 | 1853066 | 1854002 | - | Modo-OR5B36 | scaffold_12795 | 979111 | 980047 | - | Modo-OR5B43P | scaffold_12795 | 1932729 | 1933667 | - | Modo-OR9I1 | scaffold_12795 | 598170 | 599109 | + | Modo-OR5B41P | scaffold_12795 | 1764835 | 1765784 | - | Modo-OR5B73 | scaffold_12795 | 1996675 | 1997608 | - | Modo-OR5B55P | scaffold_12795 | 1364868 | 1365810 | - | Modo-OR5B54 | scaffold_12795 | 1816048 | 1817128 | + | Modo-OR5B49 | scaffold_12795 | 1958093 | 1959035 | - | Modo-OR5B53 | scaffold_12795 | 1888520 | 1889447 | - | Modo-ORUN2 | scaffold_12795 | 1903516 | 1903980 | - | Modo-OR5B56P | scaffold_12795 | 1870036 | 1870958 | - | Modo-OR5B69P | scaffold_12795 | 1272802 | 1273756 | - | Modo-OR5B70P | scaffold_12795 | 1325316 | 1326257 | - | Modo-OR5B21 | scaffold_12795 | 2013509 | 2014445 | - | Modo-OR5B76P | scaffold_12795 | 1087492 | 1088308 | - | Modo-OR10Q7P | scaffold_12795 | 822553 | 823481 | - | Modo-OR5B64P | scaffold_12795 | 1539182 | 1540115 | - | Modo-OR5B37 | scaffold_12795 | 1024364 | 1025279 | - | Modo-OR5B50 | scaffold_12795 | 1748046 | 1749000 | - | Modo-OR9Q5P | scaffold_12795 | 529325 | 530246 | + | Modo-OR5CB2P | scaffold_12795 | 1059362 | 1060340 | - | Modo-OR5B51 | scaffold_12795 | 1043875 | 1044808 | - | Modo-OR1S4 | scaffold_12795 | 562131 | 563049 | - | Modo-OR5B75 | scaffold_12795 | 1432759 | 1433701 | - | Modo-OR10Q6 | scaffold_12795 | 798021 | 798966 | - | Modo-OR5B57P | scaffold_12795 | 991933 | 992861 | - | Modo-OR5B74 | scaffold_12795 | 1684102 | 1685200 | - | Modo-OR10Q11P | scaffold_12795 | 839483 | 840385 | - | Modo-OR5B78P | scaffold_12795 | 1180433 | 1180799 | + | Modo-OR5B46 | scaffold_12795 | 956742 | 957918 | + | Modo-OR5B26 | scaffold_12795 | 941264 | 942200 | + | Modo-OR10Q9 | scaffold_12795 | 779079 | 780024 | - | Modo-OR5B72P | scaffold_12795 | 1798567 | 1799501 | - | Modo-OR9I9P | scaffold_12795 | 614711 | 615646 | + | Modo-OR5B66P | scaffold_12795 | 1348148 | 1349088 | - | Modo-OR10Q8 | scaffold_12795 | 858705 | 859743 | - | Modo-OR5BA2 | scaffold_12795 | 394560 | 395517 | - | Modo-OR5B47P | scaffold_12795 | 1208058 | 1209002 | - | Modo-OR10AO1P | scaffold_12795 | 815706 | 816423 | - | Modo-OR5Y1P | scaffold_12795 | 1826578 | 1827186 | - | Modo-OR5B44 | scaffold_12795 | 1967301 | 1968243 | - | Modo-OR5B63P | scaffold_12795 | 1578594 | 1579537 | - | Modo-OR5B91P | scaffold_12795 | 556204 | 557123 | - | Modo-OR5B92 | scaffold_12795 | 1071825 | 1072758 | - | Modo-OR5B82 | scaffold_12795 | 1308426 | 1309377 | - | Modo-OR10Q5 | scaffold_12795 | 879888 | 880809 | - | Modo-OR9I6 | scaffold_12795 | 509630 | 510563 | + | Modo-OR5B84P | scaffold_12795 | 1706774 | 1707730 | - | Modo-OR5B12 | scaffold_12795 | 1007014 | 1007947 | - | Modo-OR9I2 | scaffold_12795 | 495175 | 496114 | + | Modo-OR5B58P | scaffold_12795 | 1901034 | 1901963 | - | Modo-OR5B71P | scaffold_12795 | 1646442 | 1647385 | - | Modo-OR5B40 | scaffold_12795 | 1369431 | 1370373 | - | Modo-OR9I7P | scaffold_12795 | 657810 | 658745 | + | Modo-OR10Q10 | scaffold_12795 | 895738 | 896698 | - | Modo-OR5B38 | scaffold_12795 | 1128791 | 1129745 | - | Modo-OR5B24 | scaffold_12795 | 1096634 | 1097609 | - | Modo-OR5B83 | scaffold_12795 | 1397388 | 1398339 | - | Modo-OR10W1P | scaffold_12795 | 688327 | 689276 | - | Modo-OR9I5P | scaffold_12795 | 645368 | 646313 | + | Modo-OR5B87P | scaffold_12795 | 1875766 | 1876678 | - |
OR members in cluster s12795@2.8
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR5BB6 | scaffold_12795 | 2661583 | 2662519 | - | Modo-OR5AN2 | scaffold_12795 | 2586977 | 2587910 | - | Modo-OR4Z3 | scaffold_12795 | 2948126 | 2949059 | + | Modo-OR5BB4 | scaffold_12795 | 2853837 | 2854770 | - | Modo-OR5A5 | scaffold_12795 | 2933599 | 2934661 | + | Modo-OR5CA2P | scaffold_12795 | 2690537 | 2691451 | + | Modo-OR5BB7 | scaffold_12795 | 2731687 | 2732617 | - | Modo-OR5A7P | scaffold_12795 | 2647389 | 2648323 | - | Modo-OR5A8 | scaffold_12795 | 2804371 | 2805301 | - | Modo-OR5BB9 | scaffold_12795 | 2745018 | 2745948 | - | Modo-OR5A9 | scaffold_12795 | 2875591 | 2876527 | + | Modo-OR14D9P | scaffold_12795 | 2630009 | 2630846 | - | Modo-OR5A2 | scaffold_12795 | 2909407 | 2910364 | - | Modo-OR14D10P | scaffold_12795 | 2719098 | 2719925 | - | Modo-OR5BB3 | scaffold_12795 | 2834728 | 2835658 | + | Modo-OR5BB8 | scaffold_12795 | 2764184 | 2765123 | - | Modo-OR5A11P | scaffold_12795 | 2891965 | 2892569 | - | Modo-OR5A3 | scaffold_12795 | 2572630 | 2573587 | - | Modo-OR5CE1P | scaffold_12795 | 2886508 | 2887323 | + | Modo-OR5BB5P | scaffold_12795 | 2781540 | 2782472 | - | Modo-OR5BB2P | scaffold_12795 | 2698062 | 2698993 | - |
OR members in cluster s12795@3.4
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR4D11P | scaffold_12795 | 3289438 | 3290372 | + | Modo-OR10V6 | scaffold_12795 | 3475791 | 3476736 | + | Modo-OR10Q3 | scaffold_12795 | 3528431 | 3529391 | + | Modo-OR4D16P | scaffold_12795 | 3305343 | 3306281 | + |