HORDE: Information for CLIC#27

Information for CLIC#27


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#27 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr11@57.7 chr11@59.1 chr19@12.1 chr1@215.2 chr1@216.5 chr18@47.9 chr18@48.7 s12795@1.2 s12795@2.8 s12795@3.4
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr11@57.7

SymbolChromosomeStartEndStrand
OR5BL1P 11 58171089 58171721 +
OR6Q1 11 58030953 58031903 +
OR10Q2P 11 58291829 58292771 -
OR1S1 11 58214784 58215719 +
OR5B19P 11 58343813 58344670 -
OR5AZ1P 11 57917302 57918230 -
OR5B17 11 58358128 58359069 -
OR10Q1 11 58227919 58228875 -
OR1S2 11 58203207 58204142 -
OR5B12 11 58439210 58440151 -
OR5BD1P 11 57945555 57946471 -
OR9Q1 11 58179445 58180374 +
OR9L1P 11 58077349 58078605 -
OR5B15P 11 58387571 58388486 -
OR5BA1P 11 57866302 57867280 -
OR5BC1P 11 58317640 58318473 -
OR5B3 11 58402468 58403409 -
OR9Q2 11 58190491 58191432 +
OR10W1 11 58266944 58267858 -
OR5B10P 11 58348988 58349628 -
OR5B21 11 58507179 58508105 -
OR9I1 11 58118503 58119444 -
OR9I3P 11 58108720 58109661 -
OR5B2 11 58422335 58423261 -
OR5B1P 11 58365830 58366763 -
OR9I2P 11 58144426 58145421 +

OR members in cluster chr11@59.1

SymbolChromosomeStartEndStrand
OR4D11 11 59503576 59504508 +
OR5BB1P 11 59391353 59392291 -
OR5AN2P 11 59309642 59310588 -
OR5A2 11 59421982 59422953 -
OR10V2P 11 59748811 59749574 +
OR4D8P 11 59491652 59492610 +
OR10V1 11 59712919 59713845 -
OR4D6 11 59456961 59457902 +
OR10Y1P 11 59728519 59729492 +
OR5BR1P 11 59332756 59334085 -
OR10V3P 11 59741325 59742049 +
OR4D7P 11 59531697 59532710 +
OR4D10 11 59477430 59478362 +
OR4D9 11 59514913 59515854 +
OR5AN1 11 59364459 59365391 +
OR5A1 11 59443169 59444113 +

mouse:
OR members in cluster chr19@12.1

SymbolChromosomeStartEndStrand
Or5a3 chr19 12,422,311 12,423,264 +
Or10q1b chr19 13,704,790 13,705,785 +
Or4d10c chr19 12,087,858 12,088,790 -
Or10v1 chr19 11,896,023 11,896,949 +
Or5a21 chr19 12,332,898 12,333,854 -
Or4d11 chr19 12,035,811 12,036,740 -
Or10v9 chr19 11,854,998 11,856,032 -
Or5bb12 chr19 12,166,189 12,167,055 -
Or5an1b chr19 12,321,890 12,322,825 -
Or10w3 chr19 13,726,224 13,727,210 +
Or4d10 chr19 12,073,698 12,074,630 -
Or5an9 chr19 12,209,568 12,210,503 +
Or5an6 chr19 12,394,265 12,395,209 +
Or5u1-ps chr19 13,158,191 13,159,313 +
Or5an1c chr19 12,240,724 12,241,659 -
Or10q12 chr19 13,768,197 13,769,300 +
Or5b101 chr19 13,027,407 13,028,327 -
Or5an10 chr19 12,298,186 12,299,130 -
Or5b12b chr19 12,883,883 12,884,824 +
Or9i16 chr19 13,887,264 13,888,208 -
Or4d10b chr19 12,058,812 12,059,813 -
Or9i1 chr19 13,861,795 13,862,742 +
Or5an1 chr19 12,283,050 12,283,985 +
Or10v5 chr19 11,828,080 11,829,024 -
Or1s2 chr19 13,780,614 13,781,564 +
Or5b95 chr19 12,680,110 12,681,045 +
Or5a1 chr19 12,119,724 12,120,674 -
Or4d6 chr19 12,108,603 12,109,544 -
Or9i2 chr19 13,838,227 13,839,171 -
Or9i14 chr19 13,814,647 13,815,588 -
Or5an11 chr19 12,268,232 12,269,167 +
Or4z4 chr19 12,098,705 12,099,637 -
Or9q2 chr19 13,794,668 13,795,609 -
Or10q3 chr19 11,870,186 11,871,214 -
Or5b94 chr19 12,674,207 12,675,142 +
Or5b99 chr19 12,998,988 12,999,917 +
Or5bc4-ps chr19 13,462,690 13,463,635 -
Or5b12 chr19 12,919,366 12,920,307 -

rat:
OR members in cluster chr1@215.2

SymbolChromosomeStartEndStrand
Or5an1 chr1 228,628,274 228,629,209 +
Or5q2-ps chr1 229,454,368 229,455,082 +
Or4d10c chr1 228,523,507 228,524,439 -
Or10v1 chr1 228,317,412 228,318,338 +
Or5a21 chr1 229,461,127 229,462,083 +
Or4d11 chr1 228,474,343 228,475,272 -
Or5an1b chr1 229,443,102 229,444,040 +
Or5bb12 chrUn_KL568473v1 24,000 24,965 -
Or5a3-ps chr1 228,684,561 228,685,361 +
Or5a1 chr1 228,557,643 228,558,593 -
Or4d6 chr1 228,545,916 228,546,857 -
Or10v9b chr1 228,262,245 228,263,198 -
Or4d10 chr1 228,504,148 228,505,080 -
Or5an9 chrUn_KL568468v1 108,681 109,631 +
Or5an6 chr1 229,416,489 229,417,448 +
Or4z7-ps chr1 228,457,117 228,457,605 -
Or5an10-ps chr1 229,480,173 229,481,119 +
Or5an12-ps chr1 229,399,414 229,400,494 +
Or4z4 chr1 228,537,142 228,538,074 -

OR members in cluster chr1@216.5

SymbolChromosomeStartEndStrand
Or9i1b chr1 230,811,800 230,812,747 +
Or5ax1-ps chr1 230,391,144 230,391,841 +
Or5b21 chr1 229,722,609 229,723,724 +
Or5b124c-ps chr1 230,415,322 230,415,849 +
Or5b124b-ps chr1 230,351,873 230,353,013 +
Or5b3 chr1 230,268,991 230,269,926 +
Or5b107 chr1 230,160,365 230,161,294 +
Or9i13 chr1 230,664,470 230,665,429 -
Or5b116b chr1 230,030,914 230,031,864 +
Or5b100 chr1 229,877,560 229,878,480 +
Or9i1-ps chr1 230,703,607 230,704,754 +
Or10w3 chr1 230,553,486 230,554,433 +
Or5b105 chr1 230,011,125 230,012,045 +
Or10q12 chr1 230,604,386 230,605,342 +
Or5aa4-ps chr1 230,022,371 230,022,855 -
Or5b116 chr1 230,305,923 230,306,864 +
Or5b107b chr1 229,991,278 229,992,132 +
Or5b12b chr1 229,755,649 229,756,590 +
Or9i16 chr1 230,686,213 230,687,157 -
Or5b123 chr1 230,377,079 230,378,011 +
Or10q1 chr1 230,576,298 230,577,251 +
Or5b127-ps chr1 230,093,370 230,094,527 -
Or1s2 chr1 230,628,996 230,629,940 +
Or5b95 chr1 229,107,911 229,108,846 +
Or5b104b chr1 230,078,987 230,079,928 -
Or5b97 chr1 229,783,168 229,784,288 -
Or5b24 chr1 229,824,542 229,825,474 +
Or5b130-ps chr1 230,433,587 230,433,958 +
Or5b124 chr1 230,450,529 230,451,467 +
Or5b126-ps chr1 229,961,147 229,962,278 -
Or5b104 chr1 229,927,017 229,927,991 -
Or9i2 chr1 230,765,571 230,766,515 -
Or10w1 chr1 230,521,416 230,522,432 +
Or9i14 chr1 230,729,013 230,729,978 -
Or5b102 chr1 229,889,771 229,890,691 +
Or5b128-ps chr1 230,035,630 230,036,711 +
Or5b106 chr1 230,114,431 230,115,342 -
Or5ay1-ps chr1 230,192,323 230,193,396 +
Or9q2 chr1 230,648,997 230,649,938 -
Or5b123b chr1 230,056,710 230,057,654 +
Or9q1 chr1 230,674,775 230,675,707 -
Or5b99 chr1 229,849,892 229,850,815 +
Or5b12 chr1 229,803,670 229,804,614 -
Or5b96 chr1 229,764,229 229,765,146 -

dog:
OR members in cluster chr18@47.9

SymbolChromosomeStartEndStrand
OR4D11 chr18 37235629 37236561 -
OR5AN5P chr18 37362565 37363518 +
OR10V10 chr18 37052457 37053482 -
OR5A2 chr18 37313831 37314877 +
OR5A3 chr18 37513461 37514507 +
OR5AN6 chr18 37496829 37497782 +
OR5AN1E chr18 37358094 37359029 +
OR10V1 chr18 37071666 37072592 +
OR10V4 chr18 37099565 37100500 +
OR4D6 chr18 37275089 37276021 -
OR4D9C chr18 37249664 37250596 -
OR5AN2 chr18 37474234 37475205 +
OR4D9B chr18 37266589 37267581 -
OR10V5 chr18 37037166 37038191 -
OR5AN1 chr18 37329690 37330625 +
OR5A1 chr18 37290624 37291580 -
OR4D9 chr18 37225147 37226079 -

OR members in cluster chr18@48.7

SymbolChromosomeStartEndStrand
OR6Q1 chr18 38284205 38285155 -
OR5B35 chr18 38058133 38059074 +
OR5B24 chr18 37925044 37925979 +
OR9I4P chr18 38253465 38254357 +
OR5AZ2 chr18 38325710 38326594 +
OR10Q2 chr18 38098986 38099942 +
OR5B2B chr18 37968095 37969036 -
OR9Q4 chr18 38162450 38163382 -
OR10Q1 chr18 38127332 38128288 +
OR5B31 chr18 38041418 38042362 +
OR5B12 chr18 37892221 37893162 +
OR9I2 chr18 38218146 38219126 -
OR5BA1 chr18 38374156 38375112 +
OR5B32 chr18 38085574 38086524 +
OR5B3B chr18 37955781 37956716 -
OR1S1P chr18 38141622 38142556 +
OR9Q3 chr18 38151625 38152626 -
OR5B3 chr18 38021824 38022759 +
OR9I1 chr18 38240309 38241250 +
OR5B21 chr18 37867192 37868139 +
OR5B2 chr18 37994324 37995265 +
OR5B33 chr18 38073624 38074565 +

opossum:
OR members in cluster s12795@1.2

SymbolChromosomeStartEndStrand
Modo-OR5B77P scaffold_12795 1080064 1080619 -
Modo-OR5B62 scaffold_12795 1782885 1783515 -
Modo-OR10Q1 scaffold_12795 759706 760666 -
Modo-OR5B42P scaffold_12795 1909525 1910453 -
Modo-OR9I8P scaffold_12795 624700 625645 +
Modo-OR5B68P scaffold_12795 1732505 1733330 -
Modo-OR5B59 scaffold_12795 1550960 1551917 -
Modo-OR5B39P scaffold_12795 1231931 1232874 -
Modo-OR5B80P scaffold_12795 1250405 1251332 -
Modo-OR5B60P scaffold_12795 1144250 1145185 -
Modo-OR5B85P scaffold_12795 1720442 1721383 -
Modo-OR5B67P scaffold_12795 571647 572563 -
Modo-OR5B65P scaffold_12795 1501540 1502481 -
Modo-OR10W2P scaffold_12795 740967 741910 -
Modo-OR5B34 scaffold_12795 1114094 1115048 -
Modo-OR5B61P scaffold_12795 1178563 1179499 +
Modo-OR5B79P scaffold_12795 1360579 1361002 -
Modo-OR1S3P scaffold_12795 577089 578026 -
Modo-OR5B81P scaffold_12795 1291999 1292942 -
Modo-OR5B25 scaffold_12795 1942025 1942925 -
Modo-OR5B52 scaffold_12795 1465760 1466711 -
Modo-OR6Q2 scaffold_12795 449378 450329 +
Modo-OR5B45P scaffold_12795 1661298 1662259 -
Modo-OR5B48P scaffold_12795 1923083 1924023 -
Modo-OR5B86 scaffold_12795 1853066 1854002 -
Modo-OR5B36 scaffold_12795 979111 980047 -
Modo-OR5B43P scaffold_12795 1932729 1933667 -
Modo-OR9I1 scaffold_12795 598170 599109 +
Modo-OR5B41P scaffold_12795 1764835 1765784 -
Modo-OR5B73 scaffold_12795 1996675 1997608 -
Modo-OR5B55P scaffold_12795 1364868 1365810 -
Modo-OR5B54 scaffold_12795 1816048 1817128 +
Modo-OR5B49 scaffold_12795 1958093 1959035 -
Modo-OR5B53 scaffold_12795 1888520 1889447 -
Modo-ORUN2 scaffold_12795 1903516 1903980 -
Modo-OR5B56P scaffold_12795 1870036 1870958 -
Modo-OR5B69P scaffold_12795 1272802 1273756 -
Modo-OR5B70P scaffold_12795 1325316 1326257 -
Modo-OR5B21 scaffold_12795 2013509 2014445 -
Modo-OR5B76P scaffold_12795 1087492 1088308 -
Modo-OR10Q7P scaffold_12795 822553 823481 -
Modo-OR5B64P scaffold_12795 1539182 1540115 -
Modo-OR5B37 scaffold_12795 1024364 1025279 -
Modo-OR5B50 scaffold_12795 1748046 1749000 -
Modo-OR9Q5P scaffold_12795 529325 530246 +
Modo-OR5CB2P scaffold_12795 1059362 1060340 -
Modo-OR5B51 scaffold_12795 1043875 1044808 -
Modo-OR1S4 scaffold_12795 562131 563049 -
Modo-OR5B75 scaffold_12795 1432759 1433701 -
Modo-OR10Q6 scaffold_12795 798021 798966 -
Modo-OR5B57P scaffold_12795 991933 992861 -
Modo-OR5B74 scaffold_12795 1684102 1685200 -
Modo-OR10Q11P scaffold_12795 839483 840385 -
Modo-OR5B78P scaffold_12795 1180433 1180799 +
Modo-OR5B46 scaffold_12795 956742 957918 +
Modo-OR5B26 scaffold_12795 941264 942200 +
Modo-OR10Q9 scaffold_12795 779079 780024 -
Modo-OR5B72P scaffold_12795 1798567 1799501 -
Modo-OR9I9P scaffold_12795 614711 615646 +
Modo-OR5B66P scaffold_12795 1348148 1349088 -
Modo-OR10Q8 scaffold_12795 858705 859743 -
Modo-OR5BA2 scaffold_12795 394560 395517 -
Modo-OR5B47P scaffold_12795 1208058 1209002 -
Modo-OR10AO1P scaffold_12795 815706 816423 -
Modo-OR5Y1P scaffold_12795 1826578 1827186 -
Modo-OR5B44 scaffold_12795 1967301 1968243 -
Modo-OR5B63P scaffold_12795 1578594 1579537 -
Modo-OR5B91P scaffold_12795 556204 557123 -
Modo-OR5B92 scaffold_12795 1071825 1072758 -
Modo-OR5B82 scaffold_12795 1308426 1309377 -
Modo-OR10Q5 scaffold_12795 879888 880809 -
Modo-OR9I6 scaffold_12795 509630 510563 +
Modo-OR5B84P scaffold_12795 1706774 1707730 -
Modo-OR5B12 scaffold_12795 1007014 1007947 -
Modo-OR9I2 scaffold_12795 495175 496114 +
Modo-OR5B58P scaffold_12795 1901034 1901963 -
Modo-OR5B71P scaffold_12795 1646442 1647385 -
Modo-OR5B40 scaffold_12795 1369431 1370373 -
Modo-OR9I7P scaffold_12795 657810 658745 +
Modo-OR10Q10 scaffold_12795 895738 896698 -
Modo-OR5B38 scaffold_12795 1128791 1129745 -
Modo-OR5B24 scaffold_12795 1096634 1097609 -
Modo-OR5B83 scaffold_12795 1397388 1398339 -
Modo-OR10W1P scaffold_12795 688327 689276 -
Modo-OR9I5P scaffold_12795 645368 646313 +
Modo-OR5B87P scaffold_12795 1875766 1876678 -

OR members in cluster s12795@2.8

SymbolChromosomeStartEndStrand
Modo-OR5BB6 scaffold_12795 2661583 2662519 -
Modo-OR5AN2 scaffold_12795 2586977 2587910 -
Modo-OR4Z3 scaffold_12795 2948126 2949059 +
Modo-OR5BB4 scaffold_12795 2853837 2854770 -
Modo-OR5A5 scaffold_12795 2933599 2934661 +
Modo-OR5CA2P scaffold_12795 2690537 2691451 +
Modo-OR5BB7 scaffold_12795 2731687 2732617 -
Modo-OR5A7P scaffold_12795 2647389 2648323 -
Modo-OR5A8 scaffold_12795 2804371 2805301 -
Modo-OR5BB9 scaffold_12795 2745018 2745948 -
Modo-OR5A9 scaffold_12795 2875591 2876527 +
Modo-OR14D9P scaffold_12795 2630009 2630846 -
Modo-OR5A2 scaffold_12795 2909407 2910364 -
Modo-OR14D10P scaffold_12795 2719098 2719925 -
Modo-OR5BB3 scaffold_12795 2834728 2835658 +
Modo-OR5BB8 scaffold_12795 2764184 2765123 -
Modo-OR5A11P scaffold_12795 2891965 2892569 -
Modo-OR5A3 scaffold_12795 2572630 2573587 -
Modo-OR5CE1P scaffold_12795 2886508 2887323 +
Modo-OR5BB5P scaffold_12795 2781540 2782472 -
Modo-OR5BB2P scaffold_12795 2698062 2698993 -

OR members in cluster s12795@3.4

SymbolChromosomeStartEndStrand
Modo-OR4D11P scaffold_12795 3289438 3290372 +
Modo-OR10V6 scaffold_12795 3475791 3476736 +
Modo-OR10Q3 scaffold_12795 3528431 3529391 +
Modo-OR4D16P scaffold_12795 3305343 3306281 +


List of all CLICs
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