HORDE: Information for CLIC#28

Information for CLIC#28


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#28 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr11@74.5 chr7@93.8 chr1@157.2 chr21@26.5 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr11@74.5

SymbolChromosomeStartEndStrand
OR2AT4 11 75088754 75089713 -
OR2AT1P 11 75131103 75131872 -
OR2AT2P 11 75071120 75072091 -

mouse:
OR members in cluster chr7@93.8

SymbolChromosomeStartEndStrand
Or2at4 chr7 99,735,145 99,736,092 +
Or2at1 chr7 99,767,047 99,768,126 +

rat:
OR members in cluster chr1@157.2

SymbolChromosomeStartEndStrand
Or2at1 chr1 164,755,094 164,756,056 +

dog:
OR members in cluster chr21@26.5

SymbolChromosomeStartEndStrand
OR2AT2 chr21 23436132 23437067 +
OR2AT8P chr21 23415864 23416552 +
OR2AT2B chr21 23430916 23431863 +
OR2AT5P chr21 23408453 23409127 +


List of all CLICs
Horde homepage