HORDE: Information for CLIC#29

Information for CLIC#29

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#29 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr11@123.6 chr9@38.9 chr8@39.3 chr8@41 chr8@42.7 chr5@13.2 s18579@6.8 s18622@0.4
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr11@123.6

SymbolChromosomeStartEndStrand
OR8B8 11 124440153 124441085 -
OR10N1P 11 124105052 124105974 -
OR8B12 11 124542725 124543654 -
OR8D1 11 124309843 124310766 -
OR6X1 11 123753583 123754518 -
OR10S1 11 123976699 123977658 -
OR10G9 11 124023013 124023945 +
OR8B7P 11 124324843 124325787 -
OR6M3P 11 123861681 123862523 -
OR8B9P 11 124481000 124481928 -
OR8Q1P 11 124601602 124602258 +
OR8G2P 11 124224732 124225678 +
OR8D4 11 123906432 123907373 +
OR4D5 11 123939617 123940570 +
OR8B6P 11 124338762 124339734 -
OR8G7P 11 124238421 124239576 +
OR10G5P 11 124009669 124010478 +
OR8B3 11 124396413 124397351 -
OR6M1 11 123805411 123806349 -
OR10G6 11 123994166 123995161 -
OR10D3 11 124185270 124186205 +
OR8G1 11 124249676 124251438 +
OR10G4 11 124015575 124016507 +
OR10G7 11 124038069 124039001 -
OR8A3P 11 124531606 124531984 +
OR8A1 11 124570120 124571046 +
OR8D2 11 124319265 124320197 -
OR8A2P 11 124460564 124461526 +
OR8G3P 11 124214749 124215684 +
OR8G5 11 124264932 124265864 +
OR10D5P 11 124054793 124055726 +
OR8C1P 11 124376877 124377807 -
OR8F1P 11 124207183 124208145 +
OR8B1P 11 124365622 124366551 -
OR10D4P 11 124093599 124094532 -
OR10G8 11 124029623 124030555 +
OR8B10P 11 124516310 124517242 -
OR8B4 11 124423945 124424871 -
OR8B5P 11 124357551 124358499 -
OR10D1P 11 124158421 124159353 +
OR6T1 11 123942870 123943838 -
OR8B2 11 124382405 124383343 -
OR8X1P 11 124404233 124405101 -
OR6M2P 11 123840958 123841903 -

mouse:
OR members in cluster chr9@38.9

SymbolChromosomeStartEndStrand
Or8u10 chr2 86,084,813 86,085,775 -
Or8b43 chr9 38,448,874 38,449,800 +
Or8b12b chr9 37,772,661 37,773,590 +
Or8c18 chr9 38,291,947 38,292,870 +
Or8c5 chr9 38,108,688 38,109,629 +
Or8g37 chr9 39,819,641 39,820,573 +
Or8c13 chr9 38,179,874 38,180,821 -
Or8b51 chr9 38,657,461 38,658,390 -
Or8b56 chr9 38,827,693 38,828,643 +
Or8b1c chr9 38,472,749 38,473,678 +
Or10d1c chr9 38,982,113 38,983,042 -
Or8g33 chr9 39,426,128 39,427,069 -
Or8b54 chr9 38,775,257 38,776,195 +
Or8b9 chr9 37,854,820 37,855,752 +
Or8b12c chr9 37,803,913 37,804,842 +
Or8c9 chr9 38,329,589 38,330,527 +
Or10d5 chr9 39,949,840 39,950,769 -
Or10g6 chr9 40,022,305 40,023,324 +
Or8b39 chr9 38,084,838 38,085,764 +
Or8b36 chr9 38,025,808 38,026,734 +
Or8g34 chr9 39,461,373 39,462,374 +
Or8b41 chr9 38,143,137 38,144,078 +
Or10g9b chr9 40,006,018 40,006,947 -
Or8b1 chr9 38,488,031 38,488,963 +
Or8d2b chr9 38,877,178 38,878,101 +
Or8b55 chr9 38,815,505 38,816,437 +
Or10g9 chr9 40,000,293 40,001,225 -
Or10g7 chr9 39,993,812 39,994,744 +
Or8b35 chr9 37,992,494 37,993,435 +
Or10n1 chr9 39,613,569 39,614,498 +
Or10s1 chr9 40,074,297 40,075,259 +
Or8c19-ps chr9 38,308,788 38,309,728 +
Or8b1b chr9 38,464,043 38,464,972 +
Or8b49 chr9 38,594,076 38,595,158 +
Or10d4c chr9 39,646,728 39,647,669 +
Or8c21-ps chr9 38,003,090 38,003,575 +
Or8b50 chr9 38,606,467 38,607,414 +
Or8b42 chr9 38,430,284 38,431,216 +
Or8b52 chr9 38,664,916 38,665,842 -
Or6x1 chr9 40,187,117 40,188,052 +
Or8g35 chr9 39,469,783 39,470,724 -
Or8d1 chr9 38,855,064 38,855,987 +
Or8b4 chr9 37,918,644 37,919,585 +
Or8c20 chr9 38,349,085 38,350,032 +
Or10d3 chr9 39,549,934 39,550,902 -
Or8b3 chr9 38,402,876 38,403,826 +
Or8b12 chr9 37,746,136 37,747,065 +
Or8f22 chr9 39,795,377 39,796,309 +
Or8b53 chr9 38,755,690 38,756,619 +
Or4d5 chr9 40,100,547 40,101,488 -
Or8b40 chr9 38,115,798 38,116,724 +
Or8c16 chr9 38,218,825 38,219,763 +
Or8b46 chr9 38,538,897 38,539,826 +
Or8b45-ps chr9 38,516,034 38,516,962 +
Or8b1d-ps chr9 38,646,593 38,647,522 -
Or8c8 chr9 38,253,419 38,254,357 +
Or10n7-ps chr9 39,686,032 39,686,942 -
Or10d1 chr9 39,572,325 39,573,257 -
Or8b48 chr9 38,581,279 38,582,208 +
Or8b3b chr9 38,672,507 38,673,481 -
Or8b44 chr9 38,498,671 38,499,600 +
Or8b8 chr9 37,897,295 37,898,335 +

rat:
OR members in cluster chr8@39.3

SymbolChromosomeStartEndStrand
Or8b9 chr8 40,345,160 40,346,092 +
Or8b12 chr8 40,258,985 40,259,914 +
Or8b37 chr8 40,524,733 40,525,656 +
Or8c5b chr8 40,448,952 40,449,896 +
Or8c5 chr8 40,691,521 40,692,462 +
Or8c22-ps chr8 40,679,845 40,680,829 +
Or8b38-ps chr8 40,591,215 40,592,343 +
Or8b36 chr8 40,505,439 40,506,284 +
Or8a1 chr8 40,219,070 40,219,996 -
Or8c5c chr8 40,764,921 40,765,850 +
Or8b12d chr8 40,262,831 40,263,760 +
Or8b4 chr8 40,410,700 40,411,626 +
Or8a1b chr8 40,191,905 40,192,915 -
Or8b35 chr8 40,488,792 40,489,733 +
Or8b8 chr8 40,383,991 40,384,926 +

OR members in cluster chr8@41

SymbolChromosomeStartEndStrand
Or8b43 chr4 1,508,590 1,509,516 +
Or8b51 chr3 158,931,303 158,932,232 -
Or8c13 chr8 41,247,536 41,248,486 +
Or8g17b chr2 35,434,787 35,435,719 -
Or8b56 chr2 35,298,335 35,299,285 +
Or8b46b chr4 1,640,318 1,641,247 +
Or8b47 chr4 1,591,444 1,592,373 +
Or8aj1-ps chr8 42,571,658 42,572,725 +
Or8b1c chr4 1,535,100 1,536,029 +
Or8g30 chr15 35,548,980 35,549,912 +
Or8g34b chr15 35,761,379 35,762,344 +
Or8c10 chr4 1,447,812 1,448,753 +
Or8g20b chr15 35,889,080 35,890,036 +
Or8d1h-ps chr8 42,688,959 42,689,513 +
Or8b46c chr4 1,611,053 1,611,970 +
Or8c19 chr4 1,363,730 1,364,659 +
Or8b54b chr3 158,887,412 158,888,350 +
Or8b3b-ps chr3 158,943,655 158,944,533 -
Or8g21 chr2 35,209,672 35,210,601 -
Or8b54c chr2 46,140,482 46,141,420 +
Or8b1b chr4 1,521,241 1,522,170 +
Or8c16c chr8 41,252,456 41,253,394 +
Or8g26 chr15 35,571,052 35,572,044 +
Or8b49 chr4 1,658,278 1,659,207 +
Or8c17 chr8 41,336,283 41,337,320 +
Or8b50 chr4 1,671,269 1,672,195 +
Or8c10b chr4 1,400,277 1,401,239 +
Or8b42 chr4 1,482,486 1,483,418 +
Or8b52 chr3 158,936,043 158,936,972 -
Or8g18-ps chr15 35,646,445 35,647,386 +
Or8g22-ps chr15 35,955,653 35,956,242 +
Or8b53c chr3 158,781,394 158,782,242 +
Or8c20 chr4 1,417,537 1,418,478 +
Or8c15b chr8 41,285,315 41,286,385 +
Or8b51b chr4 1,513,759 1,514,688 +
Or8c16 chr8 41,302,631 41,303,569 +
Or8c5d chr8 41,235,156 41,236,085 +
Or8d1-ps chr2 115,231,127 115,232,050 -
Or8c18 chr8 41,350,403 41,351,341 +
Or8g39-ps chr15 36,147,225 36,148,366 -
Or8g24 chr15 35,909,279 35,910,223 +
Or8b3c chr4 1,430,882 1,431,895 +
Or10d1c chr2 35,191,583 35,192,515 -
Or8b43b chr4 1,496,941 1,497,867 +
Or8c9 chr4 1,371,401 1,372,339 +
Or8g20e chr15 35,813,468 35,814,517 +
Or8b1 chr4 1,557,599 1,558,531 +
Or8d23b-ps chr8 42,712,918 42,714,047 +
Or8g34 chr15 35,789,428 35,790,369 +
Or8b55 chr2 35,285,910 35,286,842 +
Or8g18e chr15 35,685,009 35,685,950 +
Or8c15-ps chr8 41,315,490 41,316,677 +
Or8g18c chr15 35,586,351 35,587,259 +
Or8b1d chr3 158,919,865 158,920,794 -
Or10ar1-ps chr2 35,359,751 35,360,629 +
Or8g26c chr15 35,629,687 35,630,643 +
Or8b46d chr4 1,601,652 1,602,581 +
Or8b53b chr3 158,847,203 158,848,132 +
Or8ak1-ps chr15 35,517,185 35,518,255 +
Or8b45 chr4 1,584,083 1,585,012 +
Or8g35b chr15 35,504,845 35,505,786 +
Or8b59 chr4 1,730,194 1,731,123 +
Or8b3 chr4 1,470,641 1,471,654 +
Or8b53 chr3 158,808,793 158,809,737 +
Or8b46 chr4 1,625,754 1,626,683 +
Or8d2-ps chr2 35,324,245 35,325,171 +
Or8b44b chr4 1,436,254 1,437,183 +
Or8c11-ps chr4 1,459,681 1,460,301 +
Or8g28 chr15 35,533,953 35,534,894 +
Or8b56e chr2 35,310,104 35,311,120 +
Or8b44 chr4 1,566,448 1,567,377 +
Or8f19 chr3 158,984,882 158,985,820 -
Or8g17-ps chr15 35,952,860 35,953,447 +

OR members in cluster chr8@42.7

SymbolChromosomeStartEndStrand
Or8f18 chr8 43,628,182 43,629,117 +
Or10n7 chr8 43,442,617 43,443,531 -
Or10d10 chr8 43,815,280 43,816,365 -
Or8g2 chr8 43,763,790 43,764,779 +
Or8f20 chr8 43,566,788 43,567,723 +
Or8f18b-ps chr8 43,590,380 43,591,183 +
Or8g36b chr8 43,248,937 43,249,887 -
Or8g37c chr8 43,675,950 43,676,882 +
Or10d5 chr8 43,795,298 43,796,224 -
Or8g28c-ps chr8 43,141,815 43,142,306 -
Or10g9b chr8 43,853,833 43,854,765 -
Or8g36c chr8 43,082,025 43,082,948 -
Or8g37b chr8 43,747,548 43,748,480 +
Or8g36 chr8 43,234,276 43,235,208 -
Or10d4b chr8 43,355,006 43,356,001 +
Or10g9 chr8 43,848,058 43,848,993 -
Or8f22-ps chr8 43,705,116 43,705,702 +
Or10s1 chr8 43,872,716 43,873,678 +
Or10d12 chr8 43,733,545 43,734,483 +
Or10n1 chr8 43,348,973 43,349,902 +
Or8g2c chr8 43,722,228 43,723,148 +
Or10d4c chr8 43,382,176 43,383,117 +
Or10g7-ps chr8 43,835,126 43,836,058 +
Or8b57 chr8 43,907,970 43,908,914 -
Or8g20 chr8 43,191,969 43,192,910 -
Or6x1 chr8 44,043,045 44,043,980 +
Or8ak2-ps chr8 43,157,367 43,157,843 -
Or10n9-ps chr8 43,398,589 43,399,235 +
Or10d4 chr8 43,408,635 43,409,567 +
Or8f20b chr8 43,606,676 43,607,611 +
Or10d3 chr8 43,282,831 43,283,766 -
Or8f1 chr8 43,644,822 43,645,751 +
Or4d5 chr8 43,919,479 43,920,420 -
Or10d1b chr8 43,469,445 43,470,377 -
Or10d1 chr8 43,303,628 43,304,560 -
Or8d6 chr8 43,781,870 43,782,850 +

dog:
OR members in cluster chr5@13.2

SymbolChromosomeStartEndStrand
OR8B3FP chr5 10016976 10017876 +
OR8B8 chr5 9934347 9935291 +
OR10D5 chr5 10414900 10415829 -
OR8B1 chr5 10053036 10053965 +
OR8B12 chr5 9842076 9843002 +
OR8B1N chr5 10130180 10131109 +
OR10S1 chr5 10509352 10510377 +
OR10G9 chr5 10450789 10451721 -
OR8B1M chr5 10087368 10088297 +
OR6T1P chr5 10540300 10541223 +
OR8D4 chr5 10587439 10588371 +
OR4D5 chr5 10546268 10547329 -
OR10D1 chr5 10229529 10230458 -
OR10D4 chr5 10384660 10385592 +
OR10N1 chr5 10373636 10374616 +
OR6M1 chr5 10649645 10650583 +
OR8B3 chr5 9992796 9993818 +
OR10G6 chr5 10495045 10495977 +
OR6M2 chr5 10632913 10633857 -
OR8B58 chr5 10525883 10526812 -
OR10D3 chr5 10297141 10298262 -
OR10G7 chr5 10479638 10480570 -
OR10G9C chr5 10469126 10470058 +
OR8D7 chr5 10003131 10004060 +
OR10D1K chr5 10327841 10328773 -
OR8A1 chr5 9826887 9827813 -
OR6M6 chr5 10597168 10598112 +
OR8D2 chr5 10178303 10179226 +
OR8F2 chr5 10259715 10260671 -
OR10D5B chr5 10425370 10426299 -
OR8AP1 chr5 10189311 10190150 +
OR8G5 chr5 10237836 10238828 -
OR8B1O chr5 10067696 10068625 +
OR8B1J chr5 10105547 10106524 +
OR8C7 chr5 9975671 9976600 -
OR10G7BP chr5 10440273 10441201 +
OR8D6 chr5 10201005 10201943 -
OR8B1L chr5 10032905 10033834 +
OR8B1K chr5 10145617 10146546 +
OR8B9 chr5 9906106 9907038 +
OR8B9B chr5 9871850 9872710 +
OR8G3 chr5 10251414 10252346 -
OR10AI1 chr5 10305507 10306439 -

opossum:
OR members in cluster s18579@6.8

SymbolChromosomeStartEndStrand
Modo-OR6T3P scaffold_18579 7182952 7183858 +
Modo-OR10G25P scaffold_18579 6965520 6966457 -
Modo-OR10N6P scaffold_18579 6270120 6271072 +
Modo-OR10AI2 scaffold_18579 6376064 6377009 -
Modo-OR10G23P scaffold_18579 6904289 6905220 -
Modo-OR8A5 scaffold_18579 6335648 6336587 -
Modo-OR10D5 scaffold_18579 6743253 6744165 -
Modo-OR10AI1P scaffold_18579 6397440 6398373 -
Modo-OR10G13 scaffold_18579 6818490 6819429 -
Modo-OR10N2 scaffold_18579 6644386 6645325 +
Modo-OR6M6 scaffold_18579 7343046 7343985 +
Modo-OR8D16 scaffold_18579 6167585 6168518 -
Modo-OR10G20 scaffold_18579 6880453 6881383 -
Modo-OR10D9 scaffold_18579 6443493 6444429 -
Modo-OR6T4 scaffold_18579 7204318 7205263 +
Modo-OR8D4 scaffold_18579 7234248 7235181 -
Modo-OR10D10 scaffold_18579 6761896 6762901 -
Modo-OR10D4 scaffold_18579 6729571 6730510 +
Modo-OR8D9 scaffold_18579 6358319 6359252 +
Modo-OR8D17 scaffold_18579 6306750 6307821 -
Modo-OR10G21 scaffold_18579 6924180 6925110 -
Modo-OR4D5 scaffold_18579 7210001 7210943 -
Modo-OR10G11 scaffold_18579 7009785 7011084 +
Modo-OR8D19 scaffold_18579 6258869 6259379 -
Modo-OR10G9 scaffold_18579 6778492 6779431 -
Modo-OR10N3 scaffold_18579 6681608 6682544 +
Modo-OR6X1 scaffold_18579 7389312 7390248 +
Modo-OR10G24P scaffold_18579 6988969 6989900 -
Modo-OR10D1 scaffold_18579 6457875 6458805 -
Modo-OR6T7 scaffold_18579 7109407 7110355 +
Modo-OR10G22 scaffold_18579 6844296 6845235 -
Modo-OR8A6P scaffold_18579 6315596 6316070 -
Modo-OR6T5 scaffold_18579 7142397 7143345 +
Modo-OR8D10P scaffold_18579 7260760 7261237 -
Modo-OR10S3 scaffold_18579 7018109 7019111 +
Modo-OR8D18 scaffold_18579 6119368 6120310 -
Modo-OR10N4 scaffold_18579 6693482 6694418 +
Modo-OR6T6 scaffold_18579 7087617 7088634 +
Modo-OR10N5P scaffold_18579 6254978 6255905 +
Modo-OR10N1 scaffold_18579 6629304 6630240 +

OR members in cluster s18622@0.4

SymbolChromosomeStartEndStrand
Modo-OR8B15 scaffold_18622 255678 256629 +
Modo-OR8B34 scaffold_18622 628103 629009 -
Modo-OR8F7P scaffold_18622 143467 144398 +
Modo-OR8G2 scaffold_18622 81593 82526 +
Modo-OR8F12P scaffold_18622 355797 356726 +
Modo-OR8G12 scaffold_18622 343317 344247 +
Modo-OR8B30 scaffold_18622 555469 556402 -
Modo-OR8F9 scaffold_18622 212970 213900 +
Modo-OR8B29P scaffold_18622 542755 543695 -
Modo-OR8B26 scaffold_18622 471939 472887 -
Modo-OR8F6P scaffold_18622 70246 71205 -
Modo-OR8G14 scaffold_18622 49516 50449 -
Modo-OR8F10 scaffold_18622 276983 277913 +
Modo-OR8F2 scaffold_18622 19684 20623 -
Modo-OR8F5 scaffold_18622 33716 34649 -
Modo-OR8F8P scaffold_18622 191539 192460 +
Modo-OR8B33 scaffold_18622 719646 720576 -
Modo-OR8A4 scaffold_18622 777756 778683 +
Modo-OR8G11 scaffold_18622 179055 179985 +
Modo-OR8B8 scaffold_18622 580382 580871 -
Modo-OR8G10 scaffold_18622 161037 161973 +
Modo-OR8B27 scaffold_18622 477345 478296 -
Modo-OR8B31 scaffold_18622 611444 612377 -
Modo-OR8B24P scaffold_18622 455228 455624 -
Modo-OR8A1 scaffold_18622 716186 717113 +
Modo-OR8B16P scaffold_18622 427991 428944 -
Modo-OR8G8P scaffold_18622 124325 125268 +
Modo-OR8F11 scaffold_18622 319637 320564 +
Modo-OR8F13 scaffold_18622 7151 8081 -
Modo-OR8B32 scaffold_18622 657421 658351 -
Modo-OR8B25P scaffold_18622 458872 459626 -
Modo-OR8D2 scaffold_18622 381408 382329 -
Modo-OR8B28 scaffold_18622 516345 517299 -
Modo-OR8F17P scaffold_18622 307828 308353 +
Modo-OR8G15P scaffold_18622 116365 117384 +
Modo-OR8G13P scaffold_18622 375418 376344 -
Modo-OR8B3P scaffold_18622 407716 408660 -

List of all CLICs
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