HORDE: Information for CLIC#3

Information for CLIC#3


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#3 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr1@144.1 chr3@96.9 chr2@192.2 chr17@60.7 s19281@0.7
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr1@144.1

SymbolChromosomeStartEndStrand
OR13Z2P 1 147445578 147446133 +
OR13Z1P 1 147419005 147419897 +

mouse:
OR members in cluster chr3@96.9

SymbolChromosomeStartEndStrand
Or13l2 chr3 97,410,220 97,411,257 -

rat:
OR members in cluster chr2@192.2

SymbolChromosomeStartEndStrand
Or13l2 chr2 199,528,905 199,529,864 -

dog:
OR members in cluster chr17@60.7

SymbolChromosomeStartEndStrand
OR13L1P chr17 57969211 57970184 +
OR13L2 chr17 57996386 57997342 +

opossum:
OR members in cluster s19281@0.7

SymbolChromosomeStartEndStrand
Modo-OR13L6 scaffold_19281 646657 647569 +
Modo-OR13L4 scaffold_19281 678346 679414 +
Modo-OR13L5 scaffold_19281 695259 696456 +


List of all CLICs
Horde homepage