HORDE: Information for CLIC#31

Information for CLIC#31

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#31 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr12@54.1 chr10@129.3 chr7@5.4 chr10@19.4 chr10@3.1 chr27@3.2 chr3@34.2 s12526@0.2 s15221@0.8
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr12@54.1

SymbolChromosomeStartEndStrand
OR10P1 12 55636892 55637830 +
OR6C64P 12 55522593 55523471 +
OR6C70 12 55469203 55470138 -
OR6U2P 12 55611623 55612554 +
OR10U1P 12 55193861 55194816 -
OR6C65 12 55400529 55401464 +
OR6C5P 12 55311835 55312757 +
OR9R1P 12 55158847 55159800 +
OR6C3 12 55331701 55332633 +
OR6C6 12 55294291 55295232 -
OR6C1 12 55320600 55321535 +
OR6C2 12 55452214 55453149 +
OR10A7 12 55221025 55221972 +
OR6C74 12 55247288 55248223 +
OR10AE3P 12 55646195 55646663 -
OR6C66P 12 55388445 55389377 +
OR6C73P 12 55396276 55397273 +
OR6C71P 12 55376801 55377736 -
OR6C7P 12 55342838 55343776 +
OR2AP1 12 55574415 55575341 +
OR6C75 12 55365111 55366046 +
OR6C4 12 55551227 55552153 +
OR6C76 12 55426254 55427189 +
OR6C69P 12 55262539 55263434 +
OR6C68 12 55492363 55493313 +
OR9K2 12 55129835 55130773 +
OR6C72P 12 55283750 55284683 +
OR9K1P 12 55115533 55116471 +

mouse:
OR members in cluster chr10@129.3

SymbolChromosomeStartEndStrand
Or6c3b chr10 129,691,116 129,692,039 -
Or6c74 chr10 130,033,628 130,034,557 +
Or6c218 chr10 129,929,513 129,930,481 -
Or6c5 chr10 129,238,151 129,239,086 +
Or6c202 chr10 129,160,032 129,160,982 -
Or6c1b chr10 129,436,814 129,437,749 +
Or9r7 chr10 130,126,111 130,127,055 -
Or6c63-ps chr10 129,063,031 129,063,957 -
Or10p1 chr10 129,607,550 129,608,479 -
Or6c213 chr10 129,737,977 129,738,915 -
Or6c75 chr10 129,500,886 129,501,851 +
Or6c33 chr10 130,017,363 130,018,298 +
Or6c69 chr10 129,911,341 129,912,276 -
Or6c38 chr10 129,093,037 129,093,972 -
Or9r3 chr10 130,111,844 130,112,788 -
Or10p22 chr10 128,989,914 128,990,849 +
Or6c76 chr10 129,775,844 129,776,854 +
Or10p21 chr10 129,011,287 129,012,213 +
Or6c219 chr10 129,945,107 129,946,060 -
Or6c210 chr10 129,659,808 129,660,740 +
Or6c207 chr10 129,268,389 129,269,321 -
Or9k2b chr10 130,179,940 130,180,878 -
Or6c6b chr10 129,311,266 129,312,105 +
Or6c201 chr10 129,132,834 129,133,766 -
Or6c212 chr10 129,722,586 129,723,542 -
Or6c69b chr10 129,790,652 129,791,587 -
Or6c65 chr10 129,767,498 129,768,433 +
Or6c6 chr10 129,350,565 129,351,506 +
Or9k2 chr10 130,162,365 130,163,324 -
Or6c69c chr10 130,074,412 130,075,347 +
Or10u3 chr10 129,974,608 129,975,567 -
Or6c208 chr10 129,387,635 129,388,591 +
Or6c66 chr10 129,625,127 129,626,059 -
Or6c3 chr10 129,472,694 129,473,626 +
Or6c35 chr10 129,332,883 129,333,815 +
Or6c209 chr10 129,647,130 129,648,062 +
Or6c88 chr10 129,570,657 129,571,616 +
Or6c215 chr10 129,801,567 129,802,523 -
Or9k7 chr10 130,210,163 130,211,236 -
Or2ap1 chr10 129,079,035 129,079,961 -
Or6c214 chr10 129,754,516 129,755,448 -
Or6c203 chr10 129,174,087 129,175,019 -
Or6c217 chr10 129,901,779 129,902,726 -
Or6c7 chr10 129,486,928 129,487,947 +
Or6c6c chr10 129,704,874 129,705,821 +

rat:
OR members in cluster chr7@5.4

SymbolChromosomeStartEndStrand
Or6c3b chr7 7,533,634 7,534,569 -
Or6c212b-ps chr7 6,865,103 6,865,579 -
Or6c2 chr7 5,105,773 5,106,708 -
Or6c206b-ps chrUn_KL568438v1 110,580 111,712 +
Or10u3b chr7 16,304,954 16,305,913 +
Or6c6b chr7 6,068,004 6,068,951 +
Or6c5d-ps chr7 4,706,518 4,707,476 +
Or6c69b chr7 6,215,743 6,216,678 +
Or6c2c chr7 4,236,046 4,236,972 -
Or6c222-ps chr7 7,889,233 7,890,341 +
Or6c210-ps chr7 5,422,890 5,424,009 +
Or6c66c-ps chr7 8,562,077 8,563,211 +
Or6c206c-ps chr7 7,832,375 7,833,513 +
Or6c66e-ps chr7 8,059,326 8,060,473 -
Or6c6f chr11 23,062,473 23,063,420 -
Or6c208 chr7 5,250,508 5,251,464 -
Or9r3b chr7 9,392,336 9,393,280 -
Or6c88b-ps chr7 8,609,911 8,611,074 +
Or6c5e-ps chr7 7,970,071 7,971,205 +
Or6c230-ps chr7 5,265,643 5,266,783 -
Or6c69e chr7 6,753,414 6,754,349 -
Or6c1f-ps chr7 5,786,507 5,787,644 +
Or2ap1 chr7 3,498,771 3,499,823 -
Or6ad2-ps chr7 8,567,727 8,568,589 +
Or6c202e chr7 5,624,406 5,625,356 +
Or6c202 chr7 6,157,327 6,158,277 +
Or6c243-ps chr7 6,029,174 6,029,944 -
Or6c207b-ps chr7 6,571,549 6,572,172 +
Or6c213e chr7 4,620,033 4,620,968 +
Or6c35b-ps chr7 8,117,469 8,118,602 +
Or6c214c-ps chr7 4,004,878 4,005,624 -
Or6c240-ps chr7 4,537,470 4,538,601 +
Or6c5-ps chr7 5,573,065 5,574,151 -
Or6c219b-ps chr7 16,325,093 16,326,248 +
Or6c5g-ps chr7 7,821,977 7,823,106 +
Or6c7b-ps chr7 8,478,641 8,479,777 +
Or6c213d-ps chr7 8,748,842 8,749,970 -
Or6c203b-ps chr7 3,874,135 3,875,070 -
Or6c245 chr7 8,463,994 8,464,848 +
Or6c1h chr7 5,195,008 5,195,955 -
Or10a51-ps chr7 9,212,817 9,213,864 +
Or6c76b chr7 16,431,803 16,432,738 -
Or6c207 chr7 16,009,642 16,010,658 -
Or6c35c-ps chr7 7,290,464 7,291,613 +
Or6c70 chr7 16,404,763 16,405,698 +
Or9k2 chr7 9,484,974 9,485,930 -
Or6c2b chr7 3,751,199 3,752,155 -
Or10u3 chr7 9,192,182 9,193,141 -
Or6c35f chr7 5,817,684 5,818,625 -
Or6c246-ps chr7 16,492,701 16,493,126 +
Or6c3 chr7 4,292,420 4,293,352 -
Or6c223-ps chr7 7,765,270 7,766,424 -
Or6c35 chr7 5,401,508 5,402,440 +
Or6c6h chr7 6,644,637 6,645,584 +
Or6c3e-ps chr7 6,633,540 6,634,472 -
Or6c226-ps chr7 7,178,795 7,179,978 +
Or6c233-ps chr7 5,719,934 5,721,085 +
Or6c225-ps chr7 7,667,177 7,668,292 -
Or6af2-ps chr7 7,220,364 7,221,493 -
Or6c3d chr7 5,167,970 5,168,902 -
Or6c68 chr7 6,096,588 6,097,637 +
Or6c35d chr7 16,035,253 16,036,185 -
Or6c227-ps chr7 8,436,587 8,437,723 +
Or6c75b-ps chr7 7,083,780 7,084,637 +
Or6c1g-ps chr7 5,315,501 5,316,645 -
Or6c33 chr7 9,262,979 9,263,917 +
Or6c216 chr7 16,461,899 16,462,840 +
Or6c228-ps chr7 7,047,342 7,048,443 +
Or6c65-ps chr7 7,674,781 7,675,930 +
Or6c236-ps chr7 5,175,037 5,175,989 -
Or6c76-ps chr7 8,882,215 8,882,988 -
Or6c238-ps chr7 7,863,484 7,864,443 +
Or6c229-ps chr7 6,765,413 6,766,563 -
Or9r3 chr7 9,426,562 9,427,506 -
Or10p22 chr7 3,425,912 3,426,847 +
Or6c241-ps chr7 7,380,805 7,381,409 -
Or6c201 chr7 3,804,091 3,805,023 -
Or6c202b-ps chr7 3,821,945 3,822,919 -
Or6c212 chr7 7,616,525 7,617,499 -
Or6c69f-ps chr7 9,027,281 9,027,778 -
Or6c5b-ps chr7 4,871,731 4,872,666 +
Or6c6i chr11 23,057,515 23,058,462 -
Or6c66d-ps chr7 6,492,738 6,493,841 -
Or6c6e-ps chr7 16,129,860 16,130,969 -
Or6c76c-ps chr7 6,716,543 6,717,250 +
Or6c244-ps chr7 5,856,677 5,857,381 +
Or6c63 chr7 3,450,053 3,450,988 -
Or6c213c-ps chr7 6,884,662 6,885,598 -
Or6c6d-ps chr7 7,573,363 7,574,512 +
Or6c3g-ps chr7 4,761,063 4,761,677 -
Or6c231-ps chr7 5,347,914 5,349,052 +
Or6c88 chr7 4,182,566 4,183,525 -
Or6c203 chr7 4,066,547 4,067,479 -
Or6c214 chrUn_KL568463v1 4,922 5,854 -
Or6c232-ps chr7 6,665,870 6,667,119 -
Or6c210b chr7 5,796,873 5,797,904 -
Or6c208b chr4 13,564,882 13,565,994 -
Or6c7 chr7 7,068,631 7,069,638 +
Or6c69d chr7 7,753,043 7,753,978 -
Or10p1b-ps chr7 8,240,166 8,240,630 -
Or6c74 chr7 9,279,620 9,280,555 +
Or6c1c-ps chr7 4,853,435 4,854,623 +
Or10p1 chr7 7,188,679 7,189,689 -
Or6c66-ps chr7 8,275,947 8,277,082 -
Or6c1 chr7 6,625,347 6,626,285 -
Or6c69 chr7 9,103,784 9,104,719 -
Or6c5f-ps chr7 7,025,517 7,026,633 +
Or6af1-ps chr7 8,037,947 8,038,956 -
Or6c213b-ps chr7 7,635,416 7,636,546 -
Or6c6-ps chr7 5,741,417 5,742,561 -
Or6c38 chr7 3,706,291 3,707,226 -
Or6c203c chr4 13,644,416 13,645,348 +
Or10p23-ps chr7 4,116,467 4,117,003 +
Or6c214b chr7 8,809,717 8,810,649 -
Or6c5c-ps chr7 8,451,701 8,452,840 +
Or6c219 chr7 9,173,377 9,174,330 -
Or6c224-ps chr7 7,839,650 7,840,802 -
Or9k2b chr7 9,591,062 9,592,000 -
Or6c237-ps chr7 4,934,636 4,935,722 +
Or6c66b chr7 4,215,901 4,216,833 -
Or6c75-ps chr7 8,504,405 8,505,349 +
Or6c215b-ps chr7 16,475,047 16,475,988 +
Or6c234-ps chr7 6,602,444 6,603,516 -
Or6c68b-ps chr7 4,814,751 4,815,886 -
Or6c69c chr7 9,341,613 9,342,548 +
Or6c66f-ps chr7 5,086,323 5,087,458 -
Or6c239-ps chr4 13,584,798 13,585,944 -
Or6c35g-ps chr7 6,547,206 6,547,802 +
Or6c211 chr7 7,310,316 7,311,272 -
Or6c242-ps chr7 7,695,944 7,697,067 +
Or6c213f chr7 6,690,741 6,691,679 -
Or6c1e-ps chr7 16,095,835 16,096,968 -
Or9r3c chr7 9,464,586 9,465,527 -
Or6c215 chr7 9,135,538 9,136,515 -
Or9k7 chr7 9,629,646 9,630,719 -
Or6c1j chr7 8,356,534 8,357,409 -
Or6c33b chr13 9,479,992 9,480,930 +
Or6c213-ps chr7 5,699,994 5,701,113 +
Or6ad1-ps chr7 5,081,361 5,082,276 -
Or6c7c-ps chr7 5,147,670 5,148,786 -
Or6c206 chr1 11,758,230 11,759,165 +
Or6c1d-ps chr7 6,845,170 6,846,305 +

dog:
OR members in cluster chr10@19.4

SymbolChromosomeStartEndStrand
OR6C49P chr10 16465860 16466533 -
OR6C45P chr10 16015493 16016424 -
OR4K14 chr10 16284341 16285303 -
OR4F33P chr10 16277974 16278813 -
OR6C78P chr10 16503996 16504929 -
OR6C20P chr10 16497237 16498146 +
OR6C2F chrUn_AAEX03023213 8836 9771 +
OR6C17 chr10 16191235 16192167 +
OR6C38 chr10 16037169 16038104 -
OR9O1P chr10 16522803 16523877 -
OR6C35 chr10 16158082 16159017 +
OR4Q8P chr10 16269862 16270567 +

OR members in cluster chr10@3.1

SymbolChromosomeStartEndStrand
OR6U3P chr10 37141 37848 +
OR6C4B chr31 7947 8870 +

OR members in cluster chr27@3.2

SymbolChromosomeStartEndStrand
OR6C27 chr27 40640 41575 -
OR6C6 chr27 59750 60691 +
OR6C42 chr27 24940 25911 -
OR9K2C chr27 204081 205040 +
OR6C75D chr27 253898 254833 -
OR6C74 chr27 98705 99640 -
OR10A7 chr27 142255 143199 -
OR6C83 chr27 8926 9900 -
OR6C69G chr27 112712 113644 +
OR9K7 chr27 331584 332522 -
OR6C69 chr27 68506 69441 -
OR9R5 chr27 279239 280171 -
OR6C33 chr27 122146 123090 -
OR9R3 chr27 191527 192471 -
OR6C75 chr27 235785 236720 +
OR9K1 chr27 266335 267273 -
OR9K2D chr27 292161 293120 +
OR9K2 chr27 305019 305957 -

OR members in cluster chr3@34.2

SymbolChromosomeStartEndStrand
OR6C94P chrUn_AAEX03022712 14073 15012 +
OR6C2D chr3 31362526 31363494 +
OR6C1L chr14 30955 31890 +
OR6C263P chrUn_AAEX03023286 8353 9267 +
OR6C7 chrUn_JH373254 345547 346539 -
OR6C41P chr3 31278373 31279255 -
OR6C1 chr3 31300271 31301311 +
OR6C2G chr3 31382762 31383697 +
OR6C3I chr3 31290535 31291467 +

opossum:
OR members in cluster s12526@0.2

SymbolChromosomeStartEndStrand
Modo-OR6C63 scaffold_12526 214557 215484 +
Modo-OR10P5P scaffold_12526 56367 57296 +
Modo-OR10P12 scaffold_12526 181709 182636 +
Modo-OR6C99 scaffold_12526 197073 198012 +
Modo-OR10P17 scaffold_12526 329627 330554 -
Modo-OR6C98 scaffold_12526 19417 20347 +
Modo-OR10P15P scaffold_12526 307776 308713 -
Modo-OR10P14 scaffold_12526 342949 343876 -
Modo-OR10P8P scaffold_12526 128311 129227 -
Modo-OR10P13P scaffold_12526 264769 265698 -
Modo-OR10P19P scaffold_12526 145082 145790 +
Modo-OR10P7P scaffold_12526 106605 107530 +
Modo-OR6U2 scaffold_12526 231277 232210 +
Modo-OR10P6P scaffold_12526 87803 88451 +
Modo-OR6C45 scaffold_12526 7154 8081 +
Modo-OR10P11 scaffold_12526 157173 158100 +
Modo-OR10P10 scaffold_12526 147369 148296 +
Modo-OR10P9 scaffold_12526 136192 137119 +
Modo-OR10P16P scaffold_12526 283619 284547 -

OR members in cluster s15221@0.8

SymbolChromosomeStartEndStrand
Modo-OR6C145P scaffold_15221 637403 638337 +
Modo-OR6C40 scaffold_15221 1226606 1227587 -
Modo-OR6C66 scaffold_15221 764452 765385 -
Modo-OR6C123P scaffold_15221 873504 874442 -
Modo-OR6C81 scaffold_15221 1132437 1133118 -
Modo-OR6C108 scaffold_15221 422960 424157 -
Modo-OR6C151 scaffold_15221 1432141 1433080 -
Modo-OR6C112 scaffold_15221 337973 338909 -
Modo-OR10U1 scaffold_15221 1068138 1069098 +
Modo-OR6C47 scaffold_15221 1415614 1416550 -
Modo-OR6C152 scaffold_15221 1448650 1449586 -
Modo-OR6C50P scaffold_15221 1300611 1301554 -
Modo-OR6C120P scaffold_15221 105241 106159 -
Modo-OR10U2 scaffold_15221 1094821 1095757 +
Modo-OR6C144P scaffold_15221 612673 613547 +
Modo-OR6C124P scaffold_15221 1289924 1290862 -
Modo-OR6C103 scaffold_15221 916429 917362 -
Modo-OR6C127P scaffold_15221 1051051 1051395 -
Modo-OR6C117P scaffold_15221 806002 806704 -
Modo-OR6C104 scaffold_15221 951087 952026 -
Modo-OR6C148 scaffold_15221 1157324 1158260 -
Modo-OR6C139 scaffold_15221 353954 354890 +
Modo-OR6C105 scaffold_15221 1021844 1022777 -
Modo-OR6C135P scaffold_15221 166311 167221 -
Modo-OR6C133 scaffold_15221 85593 86529 -
Modo-OR6C113P scaffold_15221 363362 364286 -
Modo-OR6C39 scaffold_15221 996762 997737 -
Modo-OR6C107 scaffold_15221 1240987 1241923 -
Modo-OR6C76 scaffold_15221 1041509 1042442 -
Modo-OR6C134P scaffold_15221 136197 137125 -
Modo-OR6C118P scaffold_15221 203864 204796 -
Modo-OR6C111 scaffold_15221 507042 507978 +
Modo-OR6C109 scaffold_15221 796614 797571 +
Modo-OR6C131P scaffold_15221 14725 15599 +
Modo-OR9K6 scaffold_15221 1563699 1564638 +
Modo-OR6C136 scaffold_15221 255033 255966 -
Modo-OR6C106 scaffold_15221 714993 716040 +
Modo-OR6C115P scaffold_15221 1078462 1079396 -
Modo-OR6C125P scaffold_15221 649495 650444 +
Modo-OR6C110 scaffold_15221 852903 853839 +
Modo-OR6C142P scaffold_15221 536070 537003 +
Modo-OR10A14 scaffold_15221 1462554 1463436 -
Modo-OR6C150 scaffold_15221 1346538 1347474 -
Modo-OR6C114 scaffold_15221 397301 398228 -
Modo-OR9K12 scaffold_15221 1639262 1640201 -
Modo-OR6C143 scaffold_15221 558139 559075 +
Modo-OR6C141P scaffold_15221 462429 463366 -
Modo-OR6C102 scaffold_15221 36724 37651 +
Modo-OR6C138 scaffold_15221 289429 290365 -
Modo-OR6C116P scaffold_15221 685923 686805 +
Modo-OR6C121P scaffold_15221 630630 631567 +
Modo-OR6C149P scaffold_15221 1196695 1197634 -
Modo-OR6C119P scaffold_15221 928189 929121 -
Modo-OR6C132 scaffold_15221 72248 73181 -
Modo-OR6C37 scaffold_15221 733780 734716 -
Modo-OR6C101 scaffold_15221 5608 6535 -
Modo-OR9K7 scaffold_15221 1604783 1605722 -
Modo-OR6C100 scaffold_15221 220021 220960 -
Modo-OR6C137 scaffold_15221 265083 266019 +
Modo-OR6C147P scaffold_15221 704468 705405 +
Modo-OR6C74 scaffold_15221 1376640 1377576 -
Modo-OR6C146P scaffold_15221 666219 666864 +
Modo-OR6C140 scaffold_15221 376257 377208 -

List of all CLICs
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