HORDE: Information for CLIC#32

Information for CLIC#32


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#32 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr14@19.5 chr15@100.2 chr15@19.8 chr14@45.4 chr2@111.3 chr15@26.3 chr3@97.3 chr15@20.4 chr30@3.3 s11704@0.4 s19262@7
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr14@19.5

SymbolChromosomeStartEndStrand
OR11H5P 14 20209297 20210195 +
OR4K5 14 19920607 19921575 +
OR4K3P 14 19868200 19869143 -
OR4K13 14 20033847 20034758 -
OR4K15 14 19975591 19976562 +
OR4K16P 14 19956547 19957554 +
OR4N1P 14 19796336 19797284 +
OR11H6 14 20223779 20224699 +
OR4K2 14 19876268 19877209 +
OR4M1 14 19780323 19781261 +
OR4T1P 14 20093355 20094275 +
OR11H2 14 19712939 19713883 -
OR4H12P 14 19759910 19760785 +
OR4U1P 14 20043916 20044855 +
OR11H4 14 20242822 20243763 +
OR4Q3 14 19747428 19748366 +
OR4L1 14 20060045 20060980 +
OR4Q2P 14 20002163 20003093 +
OR11P1P 14 20183925 20184298 -
OR4K1 14 19935667 19936599 +
OR11K2P 14 19733346 19734293 -
OR4K14 14 20014264 20015193 -
OR11G1P 14 20179228 20180178 +
OR4N2 14 19827449 19828369 +
OR4N5 14 20143736 20144659 +
OR11G2 14 20197438 20198370 +
OR4K17 14 20117500 20118435 +
OR11H7P 14 20229402 20230343 +
OR4K6P 14 19847367 19848305 +
OR4K4P 14 19905705 19906635 +

OR members in cluster chr15@100.2

SymbolChromosomeStartEndStrand
OR4G2P 15 101926772 101927641 -
OR4F13P 15 101848645 101849581 +
OR4F28P 15 101875964 101876898 +
OR4F15 15 101818187 101819122 +
OR4F6 15 101805720 101806655 +
OR4G6P 15 101937550 101938493 -
OR4F4 15 101922145 101923059 -
OR4F14P 15 101828741 101829676 +

OR members in cluster chr15@19.8

SymbolChromosomeStartEndStrand
OR11H3P 15 22009550 22010496 -
OR4N3P 15 22125511 22126431 +
OR4Q1P 15 22044417 22045397 +
OR11K1P 15 22030903 22031831 -
OR11J1P 15 21980286 21981245 -
OR4H6P 15 22056709 22057639 +
OR4N4 15 22094522 22095469 +
OR4M2 15 22080625 22081563 +

mouse:
OR members in cluster chr14@45.4

SymbolChromosomeStartEndStrand
Or11g1 chr14 50,413,546 50,414,478 +
Or11g7 chr14 50,453,054 50,453,986 +
Or11h7 chr14 50,653,116 50,654,180 +
Or4n5 chr14 49,894,877 49,895,800 -
Or4k15 chr14 50,126,579 50,127,550 +
Or4k2 chr14 50,186,265 50,187,218 -
Or4k5 chr14 50,147,904 50,148,872 -
Or4n4b chr14 50,298,384 50,299,307 -
Or4q3 chr14 50,345,379 50,346,440 -
Or4k15c chr14 50,083,732 50,084,679 -
Or4k15b chr14 50,034,439 50,035,401 -
Or11g24 chr14 50,424,413 50,425,447 +
Or11g26 chr14 50,515,206 50,516,138 +
Or4m1 chr14 50,319,895 50,320,833 -
Or11h4b chr14 50,680,694 50,681,665 -
Or4l15 chr14 49,960,144 49,961,070 -
Or11j4 chr14 50,392,758 50,393,693 +
Or4n4 chr14 50,281,328 50,282,251 -
Or4k6 chr14 50,237,906 50,238,883 -

OR members in cluster chr2@111.3

SymbolChromosomeStartEndStrand
Or4f7 chr2 111,813,789 111,814,775 -
Or4f15 chr2 111,983,137 111,984,096 -
Or4f56 chr2 111,872,918 111,873,853 -
Or4k44 chr2 111,537,352 111,538,287 -
Or4k50-ps chr2 111,691,520 111,692,453 +
Or5m9 chr2 86,046,484 86,047,413 +
Or4f6 chr2 112,008,249 112,009,184 -
Or4k42 chr2 111,489,221 111,490,156 -
Or4f4b chr2 111,483,432 111,484,325 +
Or4k47 chr2 111,621,137 111,622,072 -
Or4k51 chr2 111,754,251 111,755,186 +
Or4k52 chr2 111,780,313 111,781,257 +
Or5m9b chr2 86,074,742 86,075,671 +
Or4k48 chr2 111,645,060 111,645,995 -
Or4f47 chr2 112,141,947 112,142,894 +
Or4k40 chr2 111,420,035 111,420,949 -
Or4k49 chr2 111,664,228 111,665,163 +
Or4g7 chr2 111,478,786 111,479,721 +

rat:
OR members in cluster chr15@26.3

SymbolChromosomeStartEndStrand
Or11g1 chr15 27,243,268 27,244,200 +
Or11h4 chr15 27,548,765 27,549,748 -
Or11g27 chr15 27,346,731 27,347,663 +
Or4n5 chr15 26,780,042 26,780,965 -
Or4k15 chr15 26,887,767 26,888,738 +
Or4k2 chr15 27,000,876 27,001,829 -
Or4k5 chr15 26,938,943 26,939,911 -
Or4k1-ps chr15 26,923,731 26,924,665 -
Or11h23b chr15 27,438,853 27,439,788 +
Or11g2 chr15 27,400,717 27,401,688 +
Or11h4d chr15 27,499,027 27,499,998 -
Or4k15c chr15 26,855,273 26,856,241 -
Or11g24 chr15 27,266,444 27,267,379 +
Or11g26b chr15 27,279,819 27,280,751 +
Or4l1 chr15 26,803,713 26,804,639 -
Or4m1 chr15 27,139,719 27,140,657 -
Or11j4 chr15 27,207,645 27,208,580 +
Or11h4c chr15 27,484,668 27,485,639 -
Or4k6 chr15 27,031,521 27,032,498 -

OR members in cluster chr3@97.3

SymbolChromosomeStartEndStrand
Or4f7 chr3 103,089,455 103,090,390 -
Or4f15 chr3 103,171,740 103,172,699 -
Or4k48b chr3 103,042,809 103,043,741 -
Or4f56 chr3 103,110,872 103,111,795 -
Or4k44 chr3 102,740,883 102,741,818 -
Or4k42c chr3 102,690,415 102,691,284 -
Or4k37 chr3 102,579,446 102,580,360 +
Or4f6b chr3 103,637,469 103,638,404 +
Or4f59 chr3 103,223,665 103,224,624 -
Or4k36 chr3 102,553,317 102,554,231 +
Or4k52 chr3 102,947,721 102,948,665 +
Or4k42b chr3 102,671,359 102,672,294 -
Or4f60b chr3 103,248,396 103,249,328 +
Or4k49 chr3 102,841,615 102,842,550 +
Or4k35 chr3 102,483,609 102,484,517 -
Or4f14f chr3 103,140,037 103,140,972 -
Or4k45 chr3 102,772,866 102,773,804 -
Or4f7c chr3 103,065,457 103,066,392 -
Or4f60 chr3 103,657,115 103,658,047 +
Or4f14 chr3 103,127,308 103,128,243 -
Or4f61b chr3 103,344,398 103,345,333 -
Or4k42-ps chr3 102,708,766 102,709,416 -
Or4f6 chr3 103,202,364 103,203,404 -
Or4f58 chr3 103,216,593 103,217,528 -
Or4k50 chr3 102,859,815 102,860,756 +
Or4k51 chr3 102,925,471 102,926,406 +
Or4f14d chr3 103,446,781 103,447,722 -
Or4g16 chr3 102,529,178 102,530,113 +
Or4f53b chr3 102,471,249 102,472,184 +
Or4f53 chr3 102,456,938 102,457,873 +
Or4f52 chr3 102,431,544 102,432,479 -
Or4f58c-ps chr3 103,616,218 103,616,592 +
Or4f61d chr3 103,399,337 103,400,272 -
Or4k48 chr3 102,825,444 102,826,379 -
Or4f55 chr3 102,619,672 102,620,586 +
Or4f47 chr3 103,556,674 103,557,621 +
Or4k46 chr3 102,801,403 102,802,518 -
Or4k38-ps chr3 102,588,125 102,588,798 -
Or4f14e chr3 103,300,453 103,301,394 -
Or4f7b chr3 102,995,379 102,996,314 -
Or4g7 chr3 102,658,573 102,659,508 +
Or4g17 chr3 102,630,019 102,630,951 +
Or4f57 chr3 103,151,163 103,152,173 -

dog:
OR members in cluster chr15@20.4

SymbolChromosomeStartEndStrand
OR11H5P chr15 17582838 17583782 +
OR11G2B chr15 17530843 17531775 +
OR11K3P chr15 17460942 17461893 +
OR4N2B chr15 17248138 17249061 -
OR11H12 chr15 17396655 17397731 +
OR11H6 chr15 17592372 17593361 +
OR11G5 chr15 17513915 17514850 +
OR11H4 chr15 17624173 17625147 +
OR4Q3B chr15 17288511 17289455 +
OR11K2 chr15 17430822 17431787 +
OR11G7 chr15 17555361 17556320 +
OR4N2 chr15 17225348 17226268 -
OR11H7 chr15 17597760 17598755 +
OR11G9 chr15 17610006 17610947 -
OR11J4 chr15 17495921 17496859 +
OR11G2 chr15 17567898 17568830 +
OR11J6 chr15 17475522 17476487 +
OR4H12B chr15 17373216 17374082 -
OR11G11 chr15 17415748 17416713 +

OR members in cluster chr30@3.3

SymbolChromosomeStartEndStrand
OR4F1 chr30 271755 272690 +
OR4G10 chr30 537492 538427 +
OR4K5 chr30 410672 411640 +
OR4K15 chr30 131500 132471 +
OR4F34 chr30 697463 698401 -
OR4L3P chr30 611113 612044 -
OR4AG1P chr30 170070 170630 +
OR4K1B chr30 95021 95953 +
OR4F23P chr30 144941 145869 +
OR4G11 chr30 364667 365602 -
OR4K1 chr30 426976 427908 +
OR4T2P chr30 574290 575188 -
OR4F1BP chr30 236212 237145 +
OR4F26P chr30 358258 359173 -
OR4G8 chr30 450352 451284 -
OR4N5 chr30 591514 592437 -
OR4Q2 chr30 629181 630119 -
OR4G9 chr30 375791 376807 -
OR4F25 chr30 223007 223942 +

opossum:
OR members in cluster s11704@0.4

SymbolChromosomeStartEndStrand
Modo-OR4G12 scaffold_11704 100513 101473 +
Modo-OR4Z6 scaffold_11704 510204 511140 -
Modo-OR4L13 scaffold_11704 454932 455862 +
Modo-OR4L14 scaffold_11704 473654 474581 -
Modo-OR4G14 scaffold_11704 85940 86876 +
Modo-OR4L9P scaffold_11704 490523 491137 -
Modo-OR4K16 scaffold_11704 658002 658938 -
Modo-OR4AA1 scaffold_11704 288266 289169 +
Modo-OR4K15P scaffold_11704 637100 638060 -
Modo-OR4K1 scaffold_11704 680658 681588 -
Modo-OR4K30 scaffold_11704 700502 701468 -
Modo-OR4N5P scaffold_11704 820249 821180 -
Modo-OR4L10P scaffold_11704 411175 411736 -
Modo-OR4F25 scaffold_11704 19062 19995 +
Modo-OR4G7 scaffold_11704 197393 198332 +
Modo-OR4G11 scaffold_11704 57113 58040 +
Modo-OR4L11P scaffold_11704 418947 419887 +
Modo-OR4G15P scaffold_11704 143065 144002 +
Modo-OR4Q5 scaffold_11704 614602 615514 -
Modo-OR4K31 scaffold_11704 328857 329805 +
Modo-OR4L6 scaffold_11704 438216 439152 +
Modo-OR4L7 scaffold_11704 378705 379638 +
Modo-OR4K14 scaffold_11704 575849 576779 -
Modo-OR4G9 scaffold_11704 164536 165472 +
Modo-OR4L8 scaffold_11704 405703 406642 +
Modo-OR4G13P scaffold_11704 73860 74593 +
Modo-OR4F41P scaffold_11704 251665 252601 +
Modo-OR4K22 scaffold_11704 691285 692254 -
Modo-OR4K13 scaffold_11704 562989 563925 +
Modo-OR4L12P scaffold_11704 448868 449804 +
Modo-OR4K6 scaffold_11704 793741 794701 -
Modo-OR4K28 scaffold_11704 736635 737589 -
Modo-OR4N8P scaffold_11704 808480 809411 -
Modo-OR4L1 scaffold_11704 365640 366579 +
Modo-OR4K32 scaffold_11704 705894 706851 -
Modo-OR4G10 scaffold_11704 263896 264832 +
Modo-OR4Q10 scaffold_11704 625523 626444 -
Modo-OR4K29 scaffold_11704 309531 310467 +

OR members in cluster s19262@7

SymbolChromosomeStartEndStrand
Modo-OR11J9 scaffold_19262 7303326 7304292 -
Modo-OR4H14 scaffold_19262 7384761 7385694 +
Modo-OR11J7 scaffold_19262 7254272 7255238 -
Modo-OR11G11 scaffold_19262 7229670 7230624 -
Modo-OR11H15P scaffold_19262 6838868 6839799 -
Modo-OR11G19P scaffold_19262 7237724 7238670 -
Modo-OR11H22P scaffold_19262 6642067 6642604 -
Modo-OR11J3P scaffold_19262 7207365 7208216 -
Modo-OR11G16P scaffold_19262 7077982 7078941 -
Modo-OR11G1 scaffold_19262 6922871 6923789 -
Modo-OR11H5 scaffold_19262 6676045 6676975 -
Modo-OR11J4 scaffold_19262 7180166 7181105 -
Modo-OR11J8P scaffold_19262 7276635 7277587 -
Modo-OR11H8 scaffold_19262 6848158 6849034 -
Modo-OR11G5P scaffold_19262 6996259 6997184 -
Modo-OR11H16P scaffold_19262 6873935 6874866 -
Modo-OR11G13 scaffold_19262 6938458 6939391 -
Modo-OR11G21P scaffold_19262 6810194 6810958 -
Modo-OR11J10P scaffold_19262 7249564 7250380 -
Modo-OR11G20P scaffold_19262 7338796 7339739 -
Modo-OR11G17 scaffold_19262 7130951 7131893 -
Modo-OR11H19P scaffold_19262 6781550 6782472 -
Modo-OR11G9P scaffold_19262 7149670 7150269 -
Modo-OR11G22P scaffold_19262 7145280 7145797 -
Modo-OR11H17 scaffold_19262 6745055 6745988 -
Modo-OR4Q4 scaffold_19262 7366640 7367597 +
Modo-OR11H20P scaffold_19262 6815968 6816898 -
Modo-OR11H11 scaffold_19262 6611493 6612432 -
Modo-OR11G15 scaffold_19262 7029457 7030393 -
Modo-OR11G14 scaffold_19262 6965304 6966279 -
Modo-OR11H21P scaffold_19262 6620980 6621778 -
Modo-OR11G18 scaffold_19262 7155027 7155975 -
Modo-OR11K4 scaffold_19262 7319885 7320815 -
Modo-OR11H18P scaffold_19262 6913647 6914616 -
Modo-OR11J6 scaffold_19262 7198763 7199699 -
Modo-OR11H14P scaffold_19262 6887553 6888472 -


List of all CLICs
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