Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.
Additional details can be found at:
Genome Biology, 2006 Oct 1;7(10):R88
Human | Mouse | Rat | Dog | Opossum |
---|---|---|---|---|
chr14@19.5 chr15@100.2 chr15@19.8 | chr14@45.4 chr2@111.3 | chr15@26.3 chr3@97.3 | chr15@20.4 chr30@3.3 | s11704@0.4 s19262@7 |
human:
OR members in cluster chr14@19.5
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR11H5P | 14 | 20209297 | 20210195 | + | OR4K5 | 14 | 19920607 | 19921575 | + | OR4K3P | 14 | 19868200 | 19869143 | - | OR4K13 | 14 | 20033847 | 20034758 | - | OR4K15 | 14 | 19975591 | 19976562 | + | OR4K16P | 14 | 19956547 | 19957554 | + | OR4N1P | 14 | 19796336 | 19797284 | + | OR11H6 | 14 | 20223779 | 20224699 | + | OR4K2 | 14 | 19876268 | 19877209 | + | OR4M1 | 14 | 19780323 | 19781261 | + | OR4T1P | 14 | 20093355 | 20094275 | + | OR11H2 | 14 | 19712939 | 19713883 | - | OR4H12P | 14 | 19759910 | 19760785 | + | OR4U1P | 14 | 20043916 | 20044855 | + | OR11H4 | 14 | 20242822 | 20243763 | + | OR4Q3 | 14 | 19747428 | 19748366 | + | OR4L1 | 14 | 20060045 | 20060980 | + | OR4Q2P | 14 | 20002163 | 20003093 | + | OR11P1P | 14 | 20183925 | 20184298 | - | OR4K1 | 14 | 19935667 | 19936599 | + | OR11K2P | 14 | 19733346 | 19734293 | - | OR4K14 | 14 | 20014264 | 20015193 | - | OR11G1P | 14 | 20179228 | 20180178 | + | OR4N2 | 14 | 19827449 | 19828369 | + | OR4N5 | 14 | 20143736 | 20144659 | + | OR11G2 | 14 | 20197438 | 20198370 | + | OR4K17 | 14 | 20117500 | 20118435 | + | OR11H7P | 14 | 20229402 | 20230343 | + | OR4K6P | 14 | 19847367 | 19848305 | + | OR4K4P | 14 | 19905705 | 19906635 | + |
OR members in cluster chr15@100.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR4G2P | 15 | 101926772 | 101927641 | - | OR4F13P | 15 | 101848645 | 101849581 | + | OR4F28P | 15 | 101875964 | 101876898 | + | OR4F15 | 15 | 101818187 | 101819122 | + | OR4F6 | 15 | 101805720 | 101806655 | + | OR4G6P | 15 | 101937550 | 101938493 | - | OR4F4 | 15 | 101922145 | 101923059 | - | OR4F14P | 15 | 101828741 | 101829676 | + |
OR members in cluster chr15@19.8
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR11H3P | 15 | 22009550 | 22010496 | - | OR4N3P | 15 | 22125511 | 22126431 | + | OR4Q1P | 15 | 22044417 | 22045397 | + | OR11K1P | 15 | 22030903 | 22031831 | - | OR11J1P | 15 | 21980286 | 21981245 | - | OR4H6P | 15 | 22056709 | 22057639 | + | OR4N4 | 15 | 22094522 | 22095469 | + | OR4M2 | 15 | 22080625 | 22081563 | + |
mouse:
OR members in cluster chr14@45.4
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or11g1 | chr14 | 50,413,546 | 50,414,478 | + | Or11g7 | chr14 | 50,453,054 | 50,453,986 | + | Or11h7 | chr14 | 50,653,116 | 50,654,180 | + | Or4n5 | chr14 | 49,894,877 | 49,895,800 | - | Or4k15 | chr14 | 50,126,579 | 50,127,550 | + | Or4k2 | chr14 | 50,186,265 | 50,187,218 | - | Or4k5 | chr14 | 50,147,904 | 50,148,872 | - | Or4n4b | chr14 | 50,298,384 | 50,299,307 | - | Or4q3 | chr14 | 50,345,379 | 50,346,440 | - | Or4k15c | chr14 | 50,083,732 | 50,084,679 | - | Or4k15b | chr14 | 50,034,439 | 50,035,401 | - | Or11g24 | chr14 | 50,424,413 | 50,425,447 | + | Or11g26 | chr14 | 50,515,206 | 50,516,138 | + | Or4m1 | chr14 | 50,319,895 | 50,320,833 | - | Or11h4b | chr14 | 50,680,694 | 50,681,665 | - | Or4l15 | chr14 | 49,960,144 | 49,961,070 | - | Or11j4 | chr14 | 50,392,758 | 50,393,693 | + | Or4n4 | chr14 | 50,281,328 | 50,282,251 | - | Or4k6 | chr14 | 50,237,906 | 50,238,883 | - |
OR members in cluster chr2@111.3
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or4f7 | chr2 | 111,813,789 | 111,814,775 | - | Or4f15 | chr2 | 111,983,137 | 111,984,096 | - | Or4f56 | chr2 | 111,872,918 | 111,873,853 | - | Or4k44 | chr2 | 111,537,352 | 111,538,287 | - | Or4k50-ps | chr2 | 111,691,520 | 111,692,453 | + | Or5m9 | chr2 | 86,046,484 | 86,047,413 | + | Or4f6 | chr2 | 112,008,249 | 112,009,184 | - | Or4k42 | chr2 | 111,489,221 | 111,490,156 | - | Or4f4b | chr2 | 111,483,432 | 111,484,325 | + | Or4k47 | chr2 | 111,621,137 | 111,622,072 | - | Or4k51 | chr2 | 111,754,251 | 111,755,186 | + | Or4k52 | chr2 | 111,780,313 | 111,781,257 | + | Or5m9b | chr2 | 86,074,742 | 86,075,671 | + | Or4k48 | chr2 | 111,645,060 | 111,645,995 | - | Or4f47 | chr2 | 112,141,947 | 112,142,894 | + | Or4k40 | chr2 | 111,420,035 | 111,420,949 | - | Or4k49 | chr2 | 111,664,228 | 111,665,163 | + | Or4g7 | chr2 | 111,478,786 | 111,479,721 | + |
rat:
OR members in cluster chr15@26.3
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or11g1 | chr15 | 27,243,268 | 27,244,200 | + | Or11h4 | chr15 | 27,548,765 | 27,549,748 | - | Or11g27 | chr15 | 27,346,731 | 27,347,663 | + | Or4n5 | chr15 | 26,780,042 | 26,780,965 | - | Or4k15 | chr15 | 26,887,767 | 26,888,738 | + | Or4k2 | chr15 | 27,000,876 | 27,001,829 | - | Or4k5 | chr15 | 26,938,943 | 26,939,911 | - | Or4k1-ps | chr15 | 26,923,731 | 26,924,665 | - | Or11h23b | chr15 | 27,438,853 | 27,439,788 | + | Or11g2 | chr15 | 27,400,717 | 27,401,688 | + | Or11h4d | chr15 | 27,499,027 | 27,499,998 | - | Or4k15c | chr15 | 26,855,273 | 26,856,241 | - | Or11g24 | chr15 | 27,266,444 | 27,267,379 | + | Or11g26b | chr15 | 27,279,819 | 27,280,751 | + | Or4l1 | chr15 | 26,803,713 | 26,804,639 | - | Or4m1 | chr15 | 27,139,719 | 27,140,657 | - | Or11j4 | chr15 | 27,207,645 | 27,208,580 | + | Or11h4c | chr15 | 27,484,668 | 27,485,639 | - | Or4k6 | chr15 | 27,031,521 | 27,032,498 | - |
OR members in cluster chr3@97.3
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or4f7 | chr3 | 103,089,455 | 103,090,390 | - | Or4f15 | chr3 | 103,171,740 | 103,172,699 | - | Or4k48b | chr3 | 103,042,809 | 103,043,741 | - | Or4f56 | chr3 | 103,110,872 | 103,111,795 | - | Or4k44 | chr3 | 102,740,883 | 102,741,818 | - | Or4k42c | chr3 | 102,690,415 | 102,691,284 | - | Or4k37 | chr3 | 102,579,446 | 102,580,360 | + | Or4f6b | chr3 | 103,637,469 | 103,638,404 | + | Or4f59 | chr3 | 103,223,665 | 103,224,624 | - | Or4k36 | chr3 | 102,553,317 | 102,554,231 | + | Or4k52 | chr3 | 102,947,721 | 102,948,665 | + | Or4k42b | chr3 | 102,671,359 | 102,672,294 | - | Or4f60b | chr3 | 103,248,396 | 103,249,328 | + | Or4k49 | chr3 | 102,841,615 | 102,842,550 | + | Or4k35 | chr3 | 102,483,609 | 102,484,517 | - | Or4f14f | chr3 | 103,140,037 | 103,140,972 | - | Or4k45 | chr3 | 102,772,866 | 102,773,804 | - | Or4f7c | chr3 | 103,065,457 | 103,066,392 | - | Or4f60 | chr3 | 103,657,115 | 103,658,047 | + | Or4f14 | chr3 | 103,127,308 | 103,128,243 | - | Or4f61b | chr3 | 103,344,398 | 103,345,333 | - | Or4k42-ps | chr3 | 102,708,766 | 102,709,416 | - | Or4f6 | chr3 | 103,202,364 | 103,203,404 | - | Or4f58 | chr3 | 103,216,593 | 103,217,528 | - | Or4k50 | chr3 | 102,859,815 | 102,860,756 | + | Or4k51 | chr3 | 102,925,471 | 102,926,406 | + | Or4f14d | chr3 | 103,446,781 | 103,447,722 | - | Or4g16 | chr3 | 102,529,178 | 102,530,113 | + | Or4f53b | chr3 | 102,471,249 | 102,472,184 | + | Or4f53 | chr3 | 102,456,938 | 102,457,873 | + | Or4f52 | chr3 | 102,431,544 | 102,432,479 | - | Or4f58c-ps | chr3 | 103,616,218 | 103,616,592 | + | Or4f61d | chr3 | 103,399,337 | 103,400,272 | - | Or4k48 | chr3 | 102,825,444 | 102,826,379 | - | Or4f55 | chr3 | 102,619,672 | 102,620,586 | + | Or4f47 | chr3 | 103,556,674 | 103,557,621 | + | Or4k46 | chr3 | 102,801,403 | 102,802,518 | - | Or4k38-ps | chr3 | 102,588,125 | 102,588,798 | - | Or4f14e | chr3 | 103,300,453 | 103,301,394 | - | Or4f7b | chr3 | 102,995,379 | 102,996,314 | - | Or4g7 | chr3 | 102,658,573 | 102,659,508 | + | Or4g17 | chr3 | 102,630,019 | 102,630,951 | + | Or4f57 | chr3 | 103,151,163 | 103,152,173 | - |
dog:
OR members in cluster chr15@20.4
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR11H5P | chr15 | 17582838 | 17583782 | + | OR11G2B | chr15 | 17530843 | 17531775 | + | OR11K3P | chr15 | 17460942 | 17461893 | + | OR4N2B | chr15 | 17248138 | 17249061 | - | OR11H12 | chr15 | 17396655 | 17397731 | + | OR11H6 | chr15 | 17592372 | 17593361 | + | OR11G5 | chr15 | 17513915 | 17514850 | + | OR11H4 | chr15 | 17624173 | 17625147 | + | OR4Q3B | chr15 | 17288511 | 17289455 | + | OR11K2 | chr15 | 17430822 | 17431787 | + | OR11G7 | chr15 | 17555361 | 17556320 | + | OR4N2 | chr15 | 17225348 | 17226268 | - | OR11H7 | chr15 | 17597760 | 17598755 | + | OR11G9 | chr15 | 17610006 | 17610947 | - | OR11J4 | chr15 | 17495921 | 17496859 | + | OR11G2 | chr15 | 17567898 | 17568830 | + | OR11J6 | chr15 | 17475522 | 17476487 | + | OR4H12B | chr15 | 17373216 | 17374082 | - | OR11G11 | chr15 | 17415748 | 17416713 | + |
OR members in cluster chr30@3.3
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR4F1 | chr30 | 271755 | 272690 | + | OR4G10 | chr30 | 537492 | 538427 | + | OR4K5 | chr30 | 410672 | 411640 | + | OR4K15 | chr30 | 131500 | 132471 | + | OR4F34 | chr30 | 697463 | 698401 | - | OR4L3P | chr30 | 611113 | 612044 | - | OR4AG1P | chr30 | 170070 | 170630 | + | OR4K1B | chr30 | 95021 | 95953 | + | OR4F23P | chr30 | 144941 | 145869 | + | OR4G11 | chr30 | 364667 | 365602 | - | OR4K1 | chr30 | 426976 | 427908 | + | OR4T2P | chr30 | 574290 | 575188 | - | OR4F1BP | chr30 | 236212 | 237145 | + | OR4F26P | chr30 | 358258 | 359173 | - | OR4G8 | chr30 | 450352 | 451284 | - | OR4N5 | chr30 | 591514 | 592437 | - | OR4Q2 | chr30 | 629181 | 630119 | - | OR4G9 | chr30 | 375791 | 376807 | - | OR4F25 | chr30 | 223007 | 223942 | + |
opossum:
OR members in cluster s11704@0.4
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR4G12 | scaffold_11704 | 100513 | 101473 | + | Modo-OR4Z6 | scaffold_11704 | 510204 | 511140 | - | Modo-OR4L13 | scaffold_11704 | 454932 | 455862 | + | Modo-OR4L14 | scaffold_11704 | 473654 | 474581 | - | Modo-OR4G14 | scaffold_11704 | 85940 | 86876 | + | Modo-OR4L9P | scaffold_11704 | 490523 | 491137 | - | Modo-OR4K16 | scaffold_11704 | 658002 | 658938 | - | Modo-OR4AA1 | scaffold_11704 | 288266 | 289169 | + | Modo-OR4K15P | scaffold_11704 | 637100 | 638060 | - | Modo-OR4K1 | scaffold_11704 | 680658 | 681588 | - | Modo-OR4K30 | scaffold_11704 | 700502 | 701468 | - | Modo-OR4N5P | scaffold_11704 | 820249 | 821180 | - | Modo-OR4L10P | scaffold_11704 | 411175 | 411736 | - | Modo-OR4F25 | scaffold_11704 | 19062 | 19995 | + | Modo-OR4G7 | scaffold_11704 | 197393 | 198332 | + | Modo-OR4G11 | scaffold_11704 | 57113 | 58040 | + | Modo-OR4L11P | scaffold_11704 | 418947 | 419887 | + | Modo-OR4G15P | scaffold_11704 | 143065 | 144002 | + | Modo-OR4Q5 | scaffold_11704 | 614602 | 615514 | - | Modo-OR4K31 | scaffold_11704 | 328857 | 329805 | + | Modo-OR4L6 | scaffold_11704 | 438216 | 439152 | + | Modo-OR4L7 | scaffold_11704 | 378705 | 379638 | + | Modo-OR4K14 | scaffold_11704 | 575849 | 576779 | - | Modo-OR4G9 | scaffold_11704 | 164536 | 165472 | + | Modo-OR4L8 | scaffold_11704 | 405703 | 406642 | + | Modo-OR4G13P | scaffold_11704 | 73860 | 74593 | + | Modo-OR4F41P | scaffold_11704 | 251665 | 252601 | + | Modo-OR4K22 | scaffold_11704 | 691285 | 692254 | - | Modo-OR4K13 | scaffold_11704 | 562989 | 563925 | + | Modo-OR4L12P | scaffold_11704 | 448868 | 449804 | + | Modo-OR4K6 | scaffold_11704 | 793741 | 794701 | - | Modo-OR4K28 | scaffold_11704 | 736635 | 737589 | - | Modo-OR4N8P | scaffold_11704 | 808480 | 809411 | - | Modo-OR4L1 | scaffold_11704 | 365640 | 366579 | + | Modo-OR4K32 | scaffold_11704 | 705894 | 706851 | - | Modo-OR4G10 | scaffold_11704 | 263896 | 264832 | + | Modo-OR4Q10 | scaffold_11704 | 625523 | 626444 | - | Modo-OR4K29 | scaffold_11704 | 309531 | 310467 | + |
OR members in cluster s19262@7
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR11J9 | scaffold_19262 | 7303326 | 7304292 | - | Modo-OR4H14 | scaffold_19262 | 7384761 | 7385694 | + | Modo-OR11J7 | scaffold_19262 | 7254272 | 7255238 | - | Modo-OR11G11 | scaffold_19262 | 7229670 | 7230624 | - | Modo-OR11H15P | scaffold_19262 | 6838868 | 6839799 | - | Modo-OR11G19P | scaffold_19262 | 7237724 | 7238670 | - | Modo-OR11H22P | scaffold_19262 | 6642067 | 6642604 | - | Modo-OR11J3P | scaffold_19262 | 7207365 | 7208216 | - | Modo-OR11G16P | scaffold_19262 | 7077982 | 7078941 | - | Modo-OR11G1 | scaffold_19262 | 6922871 | 6923789 | - | Modo-OR11H5 | scaffold_19262 | 6676045 | 6676975 | - | Modo-OR11J4 | scaffold_19262 | 7180166 | 7181105 | - | Modo-OR11J8P | scaffold_19262 | 7276635 | 7277587 | - | Modo-OR11H8 | scaffold_19262 | 6848158 | 6849034 | - | Modo-OR11G5P | scaffold_19262 | 6996259 | 6997184 | - | Modo-OR11H16P | scaffold_19262 | 6873935 | 6874866 | - | Modo-OR11G13 | scaffold_19262 | 6938458 | 6939391 | - | Modo-OR11G21P | scaffold_19262 | 6810194 | 6810958 | - | Modo-OR11J10P | scaffold_19262 | 7249564 | 7250380 | - | Modo-OR11G20P | scaffold_19262 | 7338796 | 7339739 | - | Modo-OR11G17 | scaffold_19262 | 7130951 | 7131893 | - | Modo-OR11H19P | scaffold_19262 | 6781550 | 6782472 | - | Modo-OR11G9P | scaffold_19262 | 7149670 | 7150269 | - | Modo-OR11G22P | scaffold_19262 | 7145280 | 7145797 | - | Modo-OR11H17 | scaffold_19262 | 6745055 | 6745988 | - | Modo-OR4Q4 | scaffold_19262 | 7366640 | 7367597 | + | Modo-OR11H20P | scaffold_19262 | 6815968 | 6816898 | - | Modo-OR11H11 | scaffold_19262 | 6611493 | 6612432 | - | Modo-OR11G15 | scaffold_19262 | 7029457 | 7030393 | - | Modo-OR11G14 | scaffold_19262 | 6965304 | 6966279 | - | Modo-OR11H21P | scaffold_19262 | 6620980 | 6621778 | - | Modo-OR11G18 | scaffold_19262 | 7155027 | 7155975 | - | Modo-OR11K4 | scaffold_19262 | 7319885 | 7320815 | - | Modo-OR11H18P | scaffold_19262 | 6913647 | 6914616 | - | Modo-OR11J6 | scaffold_19262 | 7198763 | 7199699 | - | Modo-OR11H14P | scaffold_19262 | 6887553 | 6888472 | - |