HORDE: Information for CLIC#36

Information for CLIC#36


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#36 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr14@22.2 chr14@48.8 chr15@32.4 - s19262@3.2
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr14@22.2

SymbolChromosomeStartEndStrand
OR6J1 14 22633771 22634811 -
OR6E1P 14 22702143 22703068 +

mouse:
OR members in cluster chr14@48.8

SymbolChromosomeStartEndStrand
Or6e1 chr14 54,281,955 54,282,893 -

rat:
OR members in cluster chr15@32.4

SymbolChromosomeStartEndStrand
Or6e1 chr15 32,924,732 32,925,673 -

opossum:
OR members in cluster s19262@3.2

SymbolChromosomeStartEndStrand
Modo-OR6E2 scaffold_19262 3172380 3173313 -
Modo-OR6E1P scaffold_19262 3120273 3121201 -
Modo-OR6E4 scaffold_19262 3097905 3098838 +
Modo-OR6E3P scaffold_19262 3187327 3188265 -
Modo-OR6J3P scaffold_19262 3138230 3138514 -
Modo-OR6J2P scaffold_19262 3071237 3072174 -
Modo-OR6J1 scaffold_19262 3233142 3234123 +


List of all CLICs
Horde homepage