Information for CLIC#38

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Human	Mouse	Rat	Dog	Opossum
chr16@3.3	chr16@3.4	chr10@12.4	chr6@39.5	s15093@0.9

^* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr16@3.3

Symbol	Chromosome	Start	End	Strand
OR1F1	16	3204247	3205182	+
OR2C1	16	3355941	3356876	+
OR1F2P	16	3215566	3216546	+

mouse:
OR members in cluster chr16@3.4

Symbol	Chromosome	Start	End	Strand
Or1f19	chr16	3,592,398	3,593,336	+
Or2y1d	chr11	49,430,478	49,431,410	+

rat:
OR members in cluster chr10@12.4

Symbol	Chromosome	Start	End	Strand
Or1f20d	chr10	12,508,448	12,509,386	-
Or1f30	chr10	12,235,169	12,236,107	-
Or1f24	chr10	12,267,715	12,268,856	-
Or1f33	chr10	12,730,962	12,731,897	-
Or1f19f	chr10	12,570,390	12,571,316	-
Or1f37	chr10	12,709,452	12,710,708	-
Or1f19	chr10	12,602,388	12,603,326	+
Or1f34	chr10	12,673,139	12,674,077	-
Or1f19d	chr10	12,332,142	12,333,083	+
Or1f21	chr10	12,385,263	12,386,222	-
Or1f31	chr10	12,776,307	12,777,245	-
Or2c1	chr10	11,941,950	11,942,885	-
Or1f29	chr10	12,100,088	12,101,071	+
Or1f19e	chr10	12,521,292	12,522,230	-
Or1f38-ps	chr10	12,381,954	12,382,607	-
Or1f26	chr10	12,643,354	12,644,292	-
Or1f35-ps	chr10	226,469	227,404	-
Or1f22-ps	chr10	12,478,512	12,479,672	-
Or1f27	chr10	12,628,176	12,629,114	-
Or1f20e	chr10	12,490,130	12,491,116	-
Or1f19b-ps	chr10	12,541,357	12,542,508	-
Or1f20	chr10	12,467,189	12,468,130	-
Or1f20b	chr10	12,213,884	12,214,822	-
Or1f28	chr10	12,817,199	12,818,137	-

dog:
OR members in cluster chr6@39.5

Symbol	Chromosome	Start	End	Strand
OR1F14P	chr6	38008361	38009310	-
OR2C1	chr6	37844715	37845650	-

opossum:
OR members in cluster s15093@0.9

Symbol	Chromosome	Start	End	Strand
Modo-OR1F1	scaffold_15093	885057	885993	+