HORDE: Information for CLIC#39

Information for CLIC#39

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#39 composed of the following clusters^*:

Human Mouse Rat Dog Opossum

chr17@3.1 chr11@73.6 chr10@61 chr9@39.8 -

^* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

Human	Mouse	Rat	Dog	Opossum
chr17@3.1	chr11@73.6	chr10@61	chr9@39.8	-

human:
OR members in cluster chr17@3.1

Symbol Chromosome Start End Strand
OR3A1 17 3291638 3292582 -

OR3A2 17 3277973 3278917 -

OR1A1 17 3215621 3216547 +

OR3A3 17 3420586 3421530 +

OR1R1P 17 3385930 3386871 +

OR3A4 17 3310311 3311354 +

OR1D4 17 3240676 3241611 +

OR1E2 17 3432873 3433841 -

OR1E1 17 3397469 3398410 -

OR1D3P 17 3265611 3266562 +

OR1G1 17 3126613 3127551 -

OR1D2 17 3092061 3092996 -

OR1A2 17 3197519 3198445 +

OR1E3P 17 3116427 3117403 +

OR1P1P 17 3153893 3154852 -

OR1D5 17 3062672 3063607 -

Symbol	Chromosome	Start	End	Strand
OR3A1	17	3291638	3292582	-
OR3A2	17	3277973	3278917	-
OR1A1	17	3215621	3216547	+
OR3A3	17	3420586	3421530	+
OR1R1P	17	3385930	3386871	+
OR3A4	17	3310311	3311354	+
OR1D4	17	3240676	3241611	+
OR1E2	17	3432873	3433841	-
OR1E1	17	3397469	3398410	-
OR1D3P	17	3265611	3266562	+
OR1G1	17	3126613	3127551	-
OR1D2	17	3092061	3092996	-
OR1A2	17	3197519	3198445	+
OR1E3P	17	3116427	3117403	+
OR1P1P	17	3153893	3154852	-
OR1D5	17	3062672	3063607	-

mouse:
OR members in cluster chr11@73.6

Symbol Chromosome Start End Strand
Or5w21-ps chr2 87,998,299 87,999,177 -

Or1e34 chr11 73,887,441 73,888,370 -

Or1e32 chr11 73,814,145 73,815,080 -

Or1e35 chr11 73,906,555 73,907,490 -

Or1e22 chr11 73,485,890 73,486,822 -

Or1e25 chr11 73,602,582 73,603,517 +

Or3a1c chr11 74,155,156 74,156,100 +

Or3a1b chr11 74,121,291 74,122,235 +

Or1e33 chr11 73,847,188 73,848,123 -

Or3a1 chr11 74,334,285 74,335,229 -

Or1p1c chr11 74,269,391 74,270,359 +

Or1a1b chr11 74,206,276 74,207,214 -

Or3a10 chr11 74,044,328 74,045,272 -

Or3a4 chr11 74,053,825 74,054,757 -

Or1p1b chr11 74,239,566 74,240,447 +

Or1e29 chr11 73,776,390 73,777,325 -

Or1e26 chr11 73,588,801 73,589,736 -

Or1p4-ps chr11 74,317,027 74,317,994 +

Or3a1d chr11 74,346,638 74,347,582 -

Or1r1 chr11 73,983,665 73,984,606 -

Symbol	Chromosome	Start	End	Strand
Or5w21-ps	chr2	87,998,299	87,999,177	-
Or1e34	chr11	73,887,441	73,888,370	-
Or1e32	chr11	73,814,145	73,815,080	-
Or1e35	chr11	73,906,555	73,907,490	-
Or1e22	chr11	73,485,890	73,486,822	-
Or1e25	chr11	73,602,582	73,603,517	+
Or3a1c	chr11	74,155,156	74,156,100	+
Or3a1b	chr11	74,121,291	74,122,235	+
Or1e33	chr11	73,847,188	73,848,123	-
Or3a1	chr11	74,334,285	74,335,229	-
Or1p1c	chr11	74,269,391	74,270,359	+
Or1a1b	chr11	74,206,276	74,207,214	-
Or3a10	chr11	74,044,328	74,045,272	-
Or3a4	chr11	74,053,825	74,054,757	-
Or1p1b	chr11	74,239,566	74,240,447	+
Or1e29	chr11	73,776,390	73,777,325	-
Or1e26	chr11	73,588,801	73,589,736	-
Or1p4-ps	chr11	74,317,027	74,317,994	+
Or3a1d	chr11	74,346,638	74,347,582	-
Or1r1	chr11	73,983,665	73,984,606	-

rat:
OR members in cluster chr10@61

Symbol Chromosome Start End Strand
Or1e26-ps chr10 60,352,600 60,353,094 -

Or1e29-ps chr10 60,536,123 60,536,746 +

Or1e25 chr10 60,405,274 60,406,209 -

Or1d2 chr10 61,160,125 61,161,060 +

Or3a1f chr10 60,974,225 60,975,169 +

Or1e26b chr10 60,308,371 60,309,306 -

Or1e23 chr10 60,274,833 60,275,768 -

Or1e33 chr10 60,572,197 60,573,129 -

Or3a1 chr10 61,087,883 61,088,827 -

Or1y1-ps chr10 60,764,164 60,764,824 -

Or1a1b chr10 61,044,414 61,045,355 -

Or1e21 chr10 60,043,842 60,044,774 +

Or1e1e chr10 60,728,049 60,729,092 +

Or3a1e chr10 60,997,525 60,998,472 +

Or3a4 chr10 60,941,419 60,942,351 -

Or1e27 chr10 60,363,588 60,364,523 +

Or3a10-ps chr10 60,929,316 60,930,462 -

Or1e30 chr10 60,496,789 60,497,787 +

Or1e21b chr10 60,190,296 60,191,228 -

Or1e20-ps chr10 60,199,044 60,199,598 +

Or1e27b chr10 60,391,614 60,392,549 +

Or1e1 chr10 59,923,201 59,924,142 +

Or1e32 chr10 60,541,475 60,542,410 -

Or1p1e chr10 62,427,517 62,428,485 +

Or3a1g-ps chr10 60,956,422 60,956,802 +

Or1e22 chr10 60,151,032 60,152,006 -

Or1e19 chr10 59,983,921 59,984,901 -

Or1e1c chr10 59,934,099 59,935,049 +

Or1e20b chr10 60,125,767 60,126,702 -

Or1e35b chr10 60,771,378 60,772,313 -

Or1p1 chr10 61,066,492 61,067,460 +

Or1e18 chr10 59,956,933 59,957,874 -

Or1e28 chr10 60,427,820 60,428,755 -

Or1a1 chr10 61,033,113 61,034,048 +

Or1e31 chr10 60,503,538 60,504,467 -

Or1e18b-ps chr10 60,250,642 60,251,583 +

Or1e19b-ps chr10 60,172,855 60,173,187 +

Or1r1 chr10 60,864,525 60,865,559 -

Symbol	Chromosome	Start	End	Strand
Or1e26-ps	chr10	60,352,600	60,353,094	-
Or1e29-ps	chr10	60,536,123	60,536,746	+
Or1e25	chr10	60,405,274	60,406,209	-
Or1d2	chr10	61,160,125	61,161,060	+
Or3a1f	chr10	60,974,225	60,975,169	+
Or1e26b	chr10	60,308,371	60,309,306	-
Or1e23	chr10	60,274,833	60,275,768	-
Or1e33	chr10	60,572,197	60,573,129	-
Or3a1	chr10	61,087,883	61,088,827	-
Or1y1-ps	chr10	60,764,164	60,764,824	-
Or1a1b	chr10	61,044,414	61,045,355	-
Or1e21	chr10	60,043,842	60,044,774	+
Or1e1e	chr10	60,728,049	60,729,092	+
Or3a1e	chr10	60,997,525	60,998,472	+
Or3a4	chr10	60,941,419	60,942,351	-
Or1e27	chr10	60,363,588	60,364,523	+
Or3a10-ps	chr10	60,929,316	60,930,462	-
Or1e30	chr10	60,496,789	60,497,787	+
Or1e21b	chr10	60,190,296	60,191,228	-
Or1e20-ps	chr10	60,199,044	60,199,598	+
Or1e27b	chr10	60,391,614	60,392,549	+
Or1e1	chr10	59,923,201	59,924,142	+
Or1e32	chr10	60,541,475	60,542,410	-
Or1p1e	chr10	62,427,517	62,428,485	+
Or3a1g-ps	chr10	60,956,422	60,956,802	+
Or1e22	chr10	60,151,032	60,152,006	-
Or1e19	chr10	59,983,921	59,984,901	-
Or1e1c	chr10	59,934,099	59,935,049	+
Or1e20b	chr10	60,125,767	60,126,702	-
Or1e35b	chr10	60,771,378	60,772,313	-
Or1p1	chr10	61,066,492	61,067,460	+
Or1e18	chr10	59,956,933	59,957,874	-
Or1e28	chr10	60,427,820	60,428,755	-
Or1a1	chr10	61,033,113	61,034,048	+
Or1e31	chr10	60,503,538	60,504,467	-
Or1e18b-ps	chr10	60,250,642	60,251,583	+
Or1e19b-ps	chr10	60,172,855	60,173,187	+
Or1r1	chr10	60,864,525	60,865,559	-

dog:
OR members in cluster chr9@39.8

Symbol Chromosome Start End Strand
OR1R1 chr9 47301778 47302719 +

OR3A1 chr9 47202713 47203657 -

OR1D10P chr9 47061495 47062498 -

OR10AO1P chr9 47287882 47288410 -

OR3A10 chr9 47248916 47249860 +

OR1E1F chr9 47308015 47308959 -

OR1D3BP chr9 47050908 47051848 -

OR3A2 chr9 47191672 47192616 -

OR3A1H chr9 47224388 47225332 -

OR1A4P chr9 47136841 47137752 -

OR1D12P chr9 47093669 47094609 -

OR1E1 chr9 47316982 47317920 -

OR1A1 chr9 47120643 47121569 -

OR1P1 chr9 47158681 47159631 +

OR1D3P chr9 47180900 47181838 +

Symbol	Chromosome	Start	End	Strand
OR1R1	chr9	47301778	47302719	+
OR3A1	chr9	47202713	47203657	-
OR1D10P	chr9	47061495	47062498	-
OR10AO1P	chr9	47287882	47288410	-
OR3A10	chr9	47248916	47249860	+
OR1E1F	chr9	47308015	47308959	-
OR1D3BP	chr9	47050908	47051848	-
OR3A2	chr9	47191672	47192616	-
OR3A1H	chr9	47224388	47225332	-
OR1A4P	chr9	47136841	47137752	-
OR1D12P	chr9	47093669	47094609	-
OR1E1	chr9	47316982	47317920	-
OR1A1	chr9	47120643	47121569	-
OR1P1	chr9	47158681	47159631	+
OR1D3P	chr9	47180900	47181838	+

List of all CLICs
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