Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.
Additional details can be found at:
Genome Biology, 2006 Oct 1;7(10):R88
Human | Mouse | Rat | Dog | Opossum |
---|---|---|---|---|
chr1@155.4 chr1@156.2 | chr1@173 chr1@174.2 | chr13@89.5 chr13@90.2 | chr38@19.8 | s15142@1.8 s16926@0.2 s19280@0.6 |
human:
OR members in cluster chr1@155.4
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR6N1 | 1 | 158765747 | 158766682 | - | OR6K3 | 1 | 158717171 | 158718115 | - | OR10R3P | 1 | 158491219 | 158492157 | + | OR10X1 | 1 | 158578922 | 158579848 | - | OR10R1P | 1 | 158514901 | 158515925 | + | OR2AQ1P | 1 | 158795997 | 158796237 | + | OR6K1P | 1 | 158694539 | 158695509 | - | OR6K6 | 1 | 158754921 | 158755844 | + | OR10K1 | 1 | 158465562 | 158466500 | + | OR10T1P | 1 | 158445073 | 158446014 | - | OR6K5P | 1 | 158742568 | 158743415 | - | OR10AA1P | 1 | 158808402 | 158809335 | - | OR10K2 | 1 | 158419931 | 158420866 | - | OR10Z1 | 1 | 158606439 | 158607377 | + | OR6Y1 | 1 | 158547131 | 158548105 | - | OR6N2 | 1 | 158776685 | 158777635 | - | OR10T2 | 1 | 158398525 | 158399466 | - | OR6K2 | 1 | 158699681 | 158700652 | - | OR10R2 | 1 | 158479911 | 158480882 | + | OR6K4P | 1 | 158724155 | 158725036 | - | OR6P1 | 1 | 158562654 | 158563604 | - |
OR members in cluster chr1@156.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR10AE1P | 1 | 159581623 | 159582220 | - | OR10J7P | 1 | 159351051 | 159352023 | + | OR10J8P | 1 | 159366161 | 159367086 | + | OR10J2P | 1 | 159279044 | 159280001 | - | OR10J5 | 1 | 159535081 | 159536007 | - | OR10J4P | 1 | 159432204 | 159433135 | + | OR10J3 | 1 | 159313673 | 159314659 | - | OR10J6P | 1 | 159598298 | 159599224 | + | OR10J9P | 1 | 159405423 | 159406409 | - | OR10J1 | 1 | 159439792 | 159440718 | + |
mouse:
OR members in cluster chr1@173
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or10j7 | chr1 | 173,183,503 | 173,184,432 | - | Or10j3b | chr1 | 173,215,653 | 173,216,591 | + | Or10j27 | chr1 | 173,130,286 | 173,131,215 | - | Or7r1 | chrX | 74,570,654 | 74,571,574 | - | Or10j3 | chr1 | 173,203,358 | 173,204,296 | + |
OR members in cluster chr1@174.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or6k8-ps | chr1 | 174,151,518 | 174,152,462 | + | Or6n1 | chr1 | 174,089,042 | 174,089,977 | + | Or10z1 | chr1 | 174,249,987 | 174,250,925 | - | Or10aa1 | chr1 | 174,041,952 | 174,042,893 | + | Or6z6 | chr7 | 6,487,916 | 6,488,872 | - | Or10aa3 | chr1 | 174,050,375 | 174,051,310 | + | Or6k4 | chr1 | 174,136,719 | 174,137,690 | + |
rat:
OR members in cluster chr13@89.5
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or10j29-ps | chr13 | 91,651,347 | 91,652,367 | + | Or10j7 | chr13 | 91,692,630 | 91,693,559 | - | Or10j27 | chr13 | 91,637,732 | 91,638,661 | - | Or10at1-ps | chr13 | 91,580,245 | 91,581,050 | - | Or10j3b | chr13 | 91,725,324 | 91,726,262 | + | Or10as1-ps | chr13 | 91,410,252 | 91,411,196 | - | Or10j5 | chr13 | 91,481,461 | 91,482,387 | + | Or10j3 | chr13 | 91,711,995 | 91,712,933 | + |
OR members in cluster chr13@90.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Or10aa3 | chr13 | 92,136,209 | 92,137,225 | + | Or10l2-ps | chr13 | 92,366,610 | 92,367,788 | + | Or10z1 | chr13 | 92,342,258 | 92,343,196 | - | Or10aa1 | chr13 | 92,103,120 | 92,104,064 | + | Or6n1 | chr13 | 92,167,643 | 92,168,578 | + | Or6n2 | chr13 | 92,146,586 | 92,147,536 | + | Or6k14 | chr13 | 92,176,921 | 92,177,865 | + | Or6k8 | chr13 | 92,241,306 | 92,242,250 | + | Or6y1 | chr13 | 92,504,374 | 92,505,348 | + | Or10x1 | chr13 | 92,376,912 | 92,377,841 | + | Or6k2 | chr13 | 92,249,759 | 92,250,721 | + | Or6k6 | chr13 | 92,209,132 | 92,210,085 | - | Or10aa1b-ps | chr13 | 92,124,432 | 92,124,863 | + | Or6k3-ps | chr13 | 92,232,864 | 92,233,613 | + | Or6p1 | chr13 | 92,412,612 | 92,413,562 | + | Or10x1b | chr13 | 92,358,280 | 92,359,209 | + | Or6k14b | chr13 | 92,196,873 | 92,197,820 | + | Or6k4 | chr13 | 92,224,944 | 92,225,915 | + |
dog:
OR members in cluster chr38@19.8
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
OR6N1 | chr38 | 22993596 | 22994543 | + | OR6K3 | chrUn_JH374157 | 3632 | 4705 | + | OR10J2 | chr38 | 22711249 | 22712178 | + | OR10X1 | chr38 | 23146266 | 23147204 | + | OR10J5 | chr38 | 22531168 | 22532331 | + | OR10J19 | chr38 | 22590695 | 22591627 | - | OR10AA2 | chr38 | 22958458 | 22959399 | + | OR10T1 | chr38 | 23252755 | 23253696 | + | OR6K5 | chr38 | 23016698 | 23017645 | + | OR10J24P | chr38 | 22582706 | 22583593 | - | OR6K6 | chr38 | 23003883 | 23004839 | - | OR10AJ1P | chr38 | 22611137 | 22611560 | + | OR10K1 | chr38 | 23236780 | 23237718 | - | OR10K2 | chr38 | 23265396 | 23266337 | + | OR10J7 | chr38 | 22655494 | 22656423 | - | OR10Z1 | chr38 | 23122342 | 23123280 | - | OR6Y1P | chr38 | 23168114 | 23169025 | + | OR10J14 | chr38 | 22472213 | 22473133 | - | OR6N2 | chr38 | 22982050 | 22983000 | + | OR10T2 | chr38 | 23283312 | 23284256 | + | OR10R3C | chr38 | 23205233 | 23206171 | - | OR10J8 | chr38 | 22629667 | 22630593 | - | OR10J3 | chr38 | 22677560 | 22678588 | + | OR6K2 | chr38 | 23043721 | 23044683 | + | OR10R6P | chr38 | 23177998 | 23178908 | - | OR6K8 | chr38 | 23033632 | 23034576 | + | OR6P1 | chr38 | 23158030 | 23159097 | + |
opossum:
OR members in cluster s15142@1.8
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR10J7 | scaffold_15142 | 1908040 | 1908970 | - | Modo-OR10J26P | scaffold_15142 | 1932317 | 1933241 | + | Modo-OR10J20 | scaffold_15142 | 1645423 | 1646350 | - | Modo-OR10J1 | scaffold_15142 | 1802536 | 1803463 | - | Modo-OR10J25P | scaffold_15142 | 1567068 | 1567996 | - | Modo-OR10J21 | scaffold_15142 | 1947354 | 1948293 | + | Modo-OR10J2 | scaffold_15142 | 2029876 | 2030806 | + | Modo-OR10J4 | scaffold_15142 | 1881483 | 1882416 | - |
OR members in cluster s16926@0.2
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR6K7 | scaffold_16926 | 412365 | 413322 | + | Modo-OR6K11P | scaffold_16926 | 360525 | 361351 | - | Modo-OR10Z2 | scaffold_16926 | 91584 | 92523 | + | Modo-OR6K13 | scaffold_16926 | 264004 | 264958 | - | Modo-OR6K4 | scaffold_16926 | 334714 | 335644 | - | Modo-OR6K1P | scaffold_16926 | 222911 | 223857 | - | Modo-OR6K2 | scaffold_16926 | 296443 | 297403 | - | Modo-OR6UN1P | scaffold_16926 | 285467 | 286331 | - | Modo-OR10R12 | scaffold_16926 | 18864 | 19788 | - | Modo-OR6K12 | scaffold_16926 | 393556 | 394501 | - | Modo-OR10R13P | scaffold_16926 | 51675 | 52603 | - |
OR members in cluster s19280@0.6
Symbol | Chromosome | Start | End | Strand |
---|---|---|---|---|
Modo-OR10R4 | scaffold_19280 | 616044 | 616962 | - | Modo-OR10R3 | scaffold_19280 | 534436 | 535381 | + | Modo-OR10R9 | scaffold_19280 | 713301 | 714264 | + | Modo-OR10K3 | scaffold_19280 | 445781 | 446741 | + | Modo-OR10T4P | scaffold_19280 | 348079 | 349025 | - | Modo-OR10X2P | scaffold_19280 | 767692 | 768624 | + | Modo-OR10T3 | scaffold_19280 | 407163 | 408105 | - | Modo-OR10R2P | scaffold_19280 | 476763 | 477709 | + | Modo-OR10R11 | scaffold_19280 | 511527 | 512460 | + | Modo-OR10K5 | scaffold_19280 | 463384 | 464344 | + | Modo-OR10K1 | scaffold_19280 | 386161 | 387100 | - | Modo-OR10R8 | scaffold_19280 | 494270 | 495209 | + |