HORDE: Information for CLIC#4

Information for CLIC#4


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#4 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr1@155.4 chr1@156.2 chr1@173 chr1@174.2 chr13@89.5 chr13@90.2 chr38@19.8 s15142@1.8 s16926@0.2 s19280@0.6
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr1@155.4

SymbolChromosomeStartEndStrand
OR6N1 1 158765747 158766682 -
OR6K3 1 158717171 158718115 -
OR10R3P 1 158491219 158492157 +
OR10X1 1 158578922 158579848 -
OR10R1P 1 158514901 158515925 +
OR2AQ1P 1 158795997 158796237 +
OR6K1P 1 158694539 158695509 -
OR6K6 1 158754921 158755844 +
OR10K1 1 158465562 158466500 +
OR10T1P 1 158445073 158446014 -
OR6K5P 1 158742568 158743415 -
OR10AA1P 1 158808402 158809335 -
OR10K2 1 158419931 158420866 -
OR10Z1 1 158606439 158607377 +
OR6Y1 1 158547131 158548105 -
OR6N2 1 158776685 158777635 -
OR10T2 1 158398525 158399466 -
OR6K2 1 158699681 158700652 -
OR10R2 1 158479911 158480882 +
OR6K4P 1 158724155 158725036 -
OR6P1 1 158562654 158563604 -

OR members in cluster chr1@156.2

SymbolChromosomeStartEndStrand
OR10AE1P 1 159581623 159582220 -
OR10J7P 1 159351051 159352023 +
OR10J8P 1 159366161 159367086 +
OR10J2P 1 159279044 159280001 -
OR10J5 1 159535081 159536007 -
OR10J4P 1 159432204 159433135 +
OR10J3 1 159313673 159314659 -
OR10J6P 1 159598298 159599224 +
OR10J9P 1 159405423 159406409 -
OR10J1 1 159439792 159440718 +

mouse:
OR members in cluster chr1@173

SymbolChromosomeStartEndStrand
Or10j7 chr1 173,183,503 173,184,432 -
Or10j3b chr1 173,215,653 173,216,591 +
Or10j27 chr1 173,130,286 173,131,215 -
Or7r1 chrX 74,570,654 74,571,574 -
Or10j3 chr1 173,203,358 173,204,296 +

OR members in cluster chr1@174.2

SymbolChromosomeStartEndStrand
Or6k8-ps chr1 174,151,518 174,152,462 +
Or6n1 chr1 174,089,042 174,089,977 +
Or10z1 chr1 174,249,987 174,250,925 -
Or10aa1 chr1 174,041,952 174,042,893 +
Or6z6 chr7 6,487,916 6,488,872 -
Or10aa3 chr1 174,050,375 174,051,310 +
Or6k4 chr1 174,136,719 174,137,690 +

rat:
OR members in cluster chr13@89.5

SymbolChromosomeStartEndStrand
Or10j29-ps chr13 91,651,347 91,652,367 +
Or10j7 chr13 91,692,630 91,693,559 -
Or10j27 chr13 91,637,732 91,638,661 -
Or10at1-ps chr13 91,580,245 91,581,050 -
Or10j3b chr13 91,725,324 91,726,262 +
Or10as1-ps chr13 91,410,252 91,411,196 -
Or10j5 chr13 91,481,461 91,482,387 +
Or10j3 chr13 91,711,995 91,712,933 +

OR members in cluster chr13@90.2

SymbolChromosomeStartEndStrand
Or10aa3 chr13 92,136,209 92,137,225 +
Or10l2-ps chr13 92,366,610 92,367,788 +
Or10z1 chr13 92,342,258 92,343,196 -
Or10aa1 chr13 92,103,120 92,104,064 +
Or6n1 chr13 92,167,643 92,168,578 +
Or6n2 chr13 92,146,586 92,147,536 +
Or6k14 chr13 92,176,921 92,177,865 +
Or6k8 chr13 92,241,306 92,242,250 +
Or6y1 chr13 92,504,374 92,505,348 +
Or10x1 chr13 92,376,912 92,377,841 +
Or6k2 chr13 92,249,759 92,250,721 +
Or6k6 chr13 92,209,132 92,210,085 -
Or10aa1b-ps chr13 92,124,432 92,124,863 +
Or6k3-ps chr13 92,232,864 92,233,613 +
Or6p1 chr13 92,412,612 92,413,562 +
Or10x1b chr13 92,358,280 92,359,209 +
Or6k14b chr13 92,196,873 92,197,820 +
Or6k4 chr13 92,224,944 92,225,915 +

dog:
OR members in cluster chr38@19.8

SymbolChromosomeStartEndStrand
OR6N1 chr38 22993596 22994543 +
OR6K3 chrUn_JH374157 3632 4705 +
OR10J2 chr38 22711249 22712178 +
OR10X1 chr38 23146266 23147204 +
OR10J5 chr38 22531168 22532331 +
OR10J19 chr38 22590695 22591627 -
OR10AA2 chr38 22958458 22959399 +
OR10T1 chr38 23252755 23253696 +
OR6K5 chr38 23016698 23017645 +
OR10J24P chr38 22582706 22583593 -
OR6K6 chr38 23003883 23004839 -
OR10AJ1P chr38 22611137 22611560 +
OR10K1 chr38 23236780 23237718 -
OR10K2 chr38 23265396 23266337 +
OR10J7 chr38 22655494 22656423 -
OR10Z1 chr38 23122342 23123280 -
OR6Y1P chr38 23168114 23169025 +
OR10J14 chr38 22472213 22473133 -
OR6N2 chr38 22982050 22983000 +
OR10T2 chr38 23283312 23284256 +
OR10R3C chr38 23205233 23206171 -
OR10J8 chr38 22629667 22630593 -
OR10J3 chr38 22677560 22678588 +
OR6K2 chr38 23043721 23044683 +
OR10R6P chr38 23177998 23178908 -
OR6K8 chr38 23033632 23034576 +
OR6P1 chr38 23158030 23159097 +

opossum:
OR members in cluster s15142@1.8

SymbolChromosomeStartEndStrand
Modo-OR10J7 scaffold_15142 1908040 1908970 -
Modo-OR10J26P scaffold_15142 1932317 1933241 +
Modo-OR10J20 scaffold_15142 1645423 1646350 -
Modo-OR10J1 scaffold_15142 1802536 1803463 -
Modo-OR10J25P scaffold_15142 1567068 1567996 -
Modo-OR10J21 scaffold_15142 1947354 1948293 +
Modo-OR10J2 scaffold_15142 2029876 2030806 +
Modo-OR10J4 scaffold_15142 1881483 1882416 -

OR members in cluster s16926@0.2

SymbolChromosomeStartEndStrand
Modo-OR6K7 scaffold_16926 412365 413322 +
Modo-OR6K11P scaffold_16926 360525 361351 -
Modo-OR10Z2 scaffold_16926 91584 92523 +
Modo-OR6K13 scaffold_16926 264004 264958 -
Modo-OR6K4 scaffold_16926 334714 335644 -
Modo-OR6K1P scaffold_16926 222911 223857 -
Modo-OR6K2 scaffold_16926 296443 297403 -
Modo-OR6UN1P scaffold_16926 285467 286331 -
Modo-OR10R12 scaffold_16926 18864 19788 -
Modo-OR6K12 scaffold_16926 393556 394501 -
Modo-OR10R13P scaffold_16926 51675 52603 -

OR members in cluster s19280@0.6

SymbolChromosomeStartEndStrand
Modo-OR10R4 scaffold_19280 616044 616962 -
Modo-OR10R3 scaffold_19280 534436 535381 +
Modo-OR10R9 scaffold_19280 713301 714264 +
Modo-OR10K3 scaffold_19280 445781 446741 +
Modo-OR10T4P scaffold_19280 348079 349025 -
Modo-OR10X2P scaffold_19280 767692 768624 +
Modo-OR10T3 scaffold_19280 407163 408105 -
Modo-OR10R2P scaffold_19280 476763 477709 +
Modo-OR10R11 scaffold_19280 511527 512460 +
Modo-OR10K5 scaffold_19280 463384 464344 +
Modo-OR10K1 scaffold_19280 386161 387100 -
Modo-OR10R8 scaffold_19280 494270 495209 +


List of all CLICs
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