HORDE: Information for CLIC#40

Information for CLIC#40


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#40 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr17@53.6 chr11@87.6 chr10@76.2 chr9@25.4 s13263@12.4
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr17@53.6

SymbolChromosomeStartEndStrand
OR4D2 17 58169656 58170576 +
OR4D1 17 58155154 58156083 +

mouse:
OR members in cluster chr11@87.6

SymbolChromosomeStartEndStrand
Or4d1 chr11 87,913,966 87,914,904 -
Or4d2b chr11 87,888,962 87,889,894 -
Or4d2 chr11 87,892,990 87,893,922 -

rat:
OR members in cluster chr10@76.2

SymbolChromosomeStartEndStrand
Or4d2b chr10 75,186,575 75,187,507 -
Or4d2 chr10 75,190,676 75,191,608 -

dog:
OR members in cluster chr9@25.4

SymbolChromosomeStartEndStrand
OR4D2 chr9 32828502 32829443 +
OR4D2C chr9 32839729 32840670 +
OR4D1 chr9 32818118 32819056 +

opossum:
OR members in cluster s13263@12.4

SymbolChromosomeStartEndStrand
Modo-OR4D1 scaffold_13263 12452196 12453279 -
Modo-OR4D14 scaffold_13263 12441352 12442285 -


List of all CLICs
Horde homepage