HORDE: Information for CLIC#42

Information for CLIC#42

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#42 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr19@9.2 chr9@19.4 chr8@16.2 chr8@18.1 chr20@54.4 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr19@9.2

SymbolChromosomeStartEndStrand
OR7H1P 19 9278433 9279369 -
OR7G15P 19 9122084 9122487 -
OR7G3 19 9126015 9126950 -
OR7D1P 19 9235144 9236076 +
OR7G1 19 9114831 9115763 -
OR1M1 19 9093245 9094183 +
OR7D4 19 9213902 9214837 -
OR1M4P 19 9082936 9083398 -
OR7D2 19 9185782 9186717 +
OR7G2 19 9102272 9103243 -

mouse:
OR members in cluster chr9@19.4

SymbolChromosomeStartEndStrand
Or7g32 chr9 19,496,750 19,497,685 +
Or7g26-ps chr9 19,318,530 19,319,462 +
Or7g20 chr9 19,035,125 19,036,057 +
Or7g17 chr9 18,856,627 18,857,589 +
Or7e173 chr9 20,027,001 20,027,936 -
Or7d43 chr9 20,054,469 20,055,362 -
Or7g33 chr9 19,537,014 19,537,928 -
Or7e176 chr9 20,259,926 20,260,810 +
Or7e174 chr9 20,100,761 20,101,687 +
Or7g23 chr9 19,174,739 19,175,674 -
Or7d41 chr9 20,285,701 20,286,633 +
Or7g31 chr9 19,477,304 19,478,248 -
Or7g21 chr9 19,120,957 19,121,907 +
Or7g30 chr9 19,440,915 19,441,850 +
Or7g35 chr9 19,584,539 19,585,474 +
Or7d42 chr9 19,920,133 19,921,146 +
Or7g25 chr9 19,248,459 19,249,397 -
Or1m1 chr9 18,754,695 18,755,633 -
Or7e167-ps chr9 19,737,451 19,738,377 +
Or7e170 chr9 19,883,386 19,884,303 -
Or7g12 chr9 18,987,990 18,988,925 +
Or7e178 chr9 20,313,926 20,314,810 -
Or7g34 chr9 19,566,438 19,567,382 -
Or7h7 chr9 20,170,637 20,171,569 -
Or7e175 chr9 20,137,202 20,138,086 +
Or7g22 chr9 19,136,995 19,137,930 +
Or7g19 chr9 18,944,623 18,945,585 +
Or7e177 chr9 20,300,211 20,301,167 +
Or7h8 chr9 20,212,351 20,213,283 +
Or7g28 chr9 19,360,418 19,361,407 -
Or7e169 chr9 19,845,667 19,846,617 -
Or7g18 chr9 18,875,329 18,876,273 +
Or7e172-ps chr9 19,996,433 19,997,359 +
Or7g16 chr9 18,815,357 18,816,292 -
Or7g29 chr9 19,374,944 19,375,879 -
Or7e168 chr9 19,808,320 19,809,246 +

rat:
OR members in cluster chr8@16.2

SymbolChromosomeStartEndStrand
Or7g25c chr8 18,114,512 18,115,456 -
Or7g21c-ps chr8 17,727,412 17,727,960 +
Or7g23 chr8 17,832,838 17,833,773 -
Or7g21b-ps chr8 17,751,402 17,752,008 +
Or7g39-ps chr8 18,143,855 18,144,921 +
Or7g23b chr8 17,775,426 17,776,424 -
Or7g24 chr8 17,859,386 17,860,348 -

OR members in cluster chr8@18.1

SymbolChromosomeStartEndStrand
Or7g32 chr8 19,548,482 19,549,423 +
Or7q1-ps chr8 20,392,191 20,393,092 -
Or7d44 chr8 19,916,458 19,917,396 -
Or7g20 chr8 18,926,418 18,927,350 +
Or7e173 chr8 20,265,891 20,266,826 +
Or7g43-ps chr8 19,687,132 19,687,670 +
Or7d43 chr8 20,442,076 20,443,068 -
Or7e169c chr8 20,213,109 20,214,047 +
Or7g33 chr8 19,671,816 19,672,730 -
Or7g37-ps chr8 17,986,323 17,987,477 -
Or7g41 chr8 18,909,902 18,910,837 -
Or7g33b-ps chr8 19,750,215 19,751,331 -
Or7e174 chr8 20,728,808 20,729,743 +
Or2aw2 chr8 18,036,848 18,037,774 -
Or7d41 chr8 20,979,845 20,980,891 +
Or7g31 chr8 19,332,112 19,333,056 -
Or7o1-ps chr8 19,185,911 19,187,034 +
Or7g21 chr8 18,969,469 18,970,413 +
Or7g30 chr8 19,274,455 19,275,390 +
Or7d42 chr8 20,172,172 20,173,107 -
Or7g35 chr8 19,810,959 19,811,894 +
Or7g26 chr8 18,062,000 18,062,971 -
Or7e171 chr8 20,230,082 20,231,008 +
Or7g25 chr8 18,050,190 18,051,128 -
Or7g28-ps chr8 18,095,140 18,095,895 -
Or7g33c chr8 19,385,470 19,386,384 -
Or1m1 chr8 18,719,447 18,720,385 -
Or7g12 chr8 18,845,552 18,846,514 +
Or7q2-ps chr8 20,594,841 20,595,728 -
Or7g34 chr8 19,585,843 19,586,811 -
Or7h7 chr8 21,340,472 21,341,431 -
Or7d41b-ps chr8 20,870,560 20,871,688 +
Or7d43c chr8 20,535,478 20,536,470 +
Or7h7b chr8 21,305,250 21,306,209 +
Or7g22 chr8 18,992,890 18,993,858 +
Or7g40-ps chr8 19,717,041 19,717,777 +
Or7g23c chr8 17,964,483 17,965,418 -
Or7g38-ps chr8 19,624,170 19,625,320 +
Or7e171b chr8 19,994,668 19,995,594 +
Or7e171c-ps chr8 20,294,092 20,294,955 +
Or7g36-ps chr8 19,849,620 19,850,786 -
Or7e176c-ps chr8 20,842,224 20,843,108 +
Or7e169 chr8 20,358,176 20,359,225 +
Or7g18 chr8 18,795,516 18,796,460 +
Or7e166 chr8 19,972,763 19,973,719 +
Or7e179-ps chr8 20,331,888 20,333,011 +
Or7e173d-ps chr8 20,397,609 20,398,529 -
Or7g42-ps chr8 18,954,518 18,955,067 -
Or7g16 chr8 18,761,987 18,762,922 -
Or7e171d chr8 20,054,308 20,055,348 +
Or7g29 chr8 19,526,578 19,527,522 -
Or7g34b chr8 19,772,308 19,773,252 -
Or7d43b-ps chr8 20,565,764 20,566,903 +
Or7g23e chr8 19,019,413 19,020,378 -

dog:
OR members in cluster chr20@54.4

SymbolChromosomeStartEndStrand
OR7G7 chr20 51643689 51644642 -
OR7G3 chr20 51576528 51577532 +
OR7G10 chr20 51529301 51530236 -
OR7E154 chr20 51426260 51427186 +
OR7H5P chr20 51432816 51433752 -
OR1M1B chr20 51719180 51720118 +
OR7G13 chr20 51634218 51635153 -
OR7G5 chr20 51579655 51580686 +
OR7D4 chr20 51458190 51459275 -
OR7G6 chr20 51666810 51667745 -
OR7H3 chr20 51492521 51493531 +
OR7E24 chr20 51395297 51396286 +
OR7E181 chr20 51415939 51416973 +
OR7D7 chr20 51273954 51274886 +
OR7E153 chr20 51404933 51405919 +
OR7G14 chr20 51612498 51613448 +
OR7G9 chr20 51588067 51589092 +
OR1M1 chr20 51695088 51696026 +
OR7G8 chr20 51625532 51626467 +
OR7D2 chr20 51472508 51473626 -

List of all CLICs
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