HORDE: Information for CLIC#45

Information for CLIC#45

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#45 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr19@14.9 chr10@78.9 chr7@12.4 chr20@50.3 s11688@0.2
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr19@14.9

SymbolChromosomeStartEndStrand
OR7A15P 19 14927052 14928057 +
OR7A10 19 14840951 14841877 -
OR1I1 19 15087066 15088010 +
OR7A11P 19 14916383 14917401 +
OR7A2P 19 14863789 14864772 -
OR7A8P 19 14852035 14852944 -
OR7C2 19 14941489 14942445 +
OR7A3P 19 14903242 14904173 -
OR7A18P 19 14886846 14887272 -
OR7A5 19 14827285 14828241 -
OR10B1P 19 15141108 15142008 -
OR7A17 19 14880429 14881355 -
OR7C1 19 14799177 14800136 -
OR7A1P 19 14891859 14892804 -

mouse:
OR members in cluster chr10@78.9

SymbolChromosomeStartEndStrand
Or7a36 chr10 78,983,792 78,984,718 +
Or1i2 chr10 78,611,701 78,612,684 -
Or7a35 chr10 79,017,324 79,018,280 +
Or7a41 chr10 79,034,798 79,035,754 +
Or7a37 chr10 78,969,651 78,970,577 +

rat:
OR members in cluster chr7@12.4

SymbolChromosomeStartEndStrand
Or7a36 chr7 13,460,479 13,461,405 -
Or7a39 chr7 13,631,972 13,632,904 +
Or7a38b chr7 13,530,573 13,531,526 -
Or7a38c chr7 13,553,010 13,553,963 -
Or1i2 chr7 13,996,819 13,997,904 +
Or7c70 chr7 13,698,647 13,699,606 +
Or7a35 chr7 13,424,358 13,425,311 -
Or7a38d chr7 13,488,208 13,489,137 -
Or7a38 chr7 13,587,479 13,588,411 -
Or7a44 chr7 13,378,338 13,379,270 +
Or7a38e chr7 13,673,925 13,674,863 +
Or7a41 chr7 13,403,902 13,404,873 -
Or7a37 chr7 13,466,347 13,467,348 -

dog:
OR members in cluster chr20@50.3

SymbolChromosomeStartEndStrand
OR7A58 chr20 47541255 47542199 +
OR7A65 chr20 47407914 47408882 +
OR7A61 chr20 47186500 47187510 -
OR7A53 chr20 47323420 47324385 -
OR7A71 chr20 47242148 47243098 -
OR7A63 chr20 47615175 47616140 +
OR7A57 chr20 47728039 47728968 +
OR7C1 chr20 47424014 47425000 +
OR7C2 chr20 47145624 47146610 -
OR7A66 chr20 47522414 47523343 +
OR7A56 chr20 47222666 47223595 -
OR7A68 chr20 47199052 47200062 -
OR7U1P chr20 47331950 47333093 -
OR7A67 chr20 47455639 47456568 +
OR7A24P chr20 47773382 47774316 -
OR7C19 chr20 47162139 47163074 -
OR7C42P chr20 47230000 47230922 -
OR7A74 chr20 47500000 47501016 -
OR7A52 chr20 47291827 47292801 +
OR7A73 chr20 47782881 47783798 -
OR7A23 chr20 47562204 47563178 -
OR7A64 chr20 47644712 47645710 -
OR1I1 chr20 47037920 47038873 -
OR7A62 chr20 47633604 47634605 +
OR7A25P chr20 47413036 47413903 +
OR7A54 chr20 47312985 47313950 -
OR7A69 chr20 47739262 47740227 +
OR7A51 chr20 47712079 47713008 +
OR7A59P chr20 47382523 47383461 +
OR7A60 chr20 47602887 47603816 +
OR7A29 chr20 47622131 47623096 +
OR7A26 chr20 47178017 47179003 +
OR7A17 chr20 47268252 47269181 +
OR7A72P chr20 47748649 47749582 -
OR7A70 chr20 47760468 47761397 -
OR7C10P chr20 47478877 47479826 +
OR7T1P chr20 47532183 47532759 -
OR7A55 chr20 47577999 47578949 +

opossum:
OR members in cluster s11688@0.2

SymbolChromosomeStartEndStrand
Modo-OR7A33P scaffold_11688 77210 78145 +
Modo-OR7D20P scaffold_11688 109946 110884 -
Modo-OR7D13 scaffold_11688 229705 230641 +
Modo-OR7D12P scaffold_11688 183141 184080 +
Modo-OR1I2 scaffold_11688 358008 358941 +
Modo-OR7C65P scaffold_11688 1040 1977 +
Modo-OR7J1P scaffold_11688 47398 48347 -
Modo-OR7D11P scaffold_11688 134502 135439 -
Modo-OR10B1 scaffold_11688 443205 443871 -
Modo-OR7D19P scaffold_11688 95060 95998 -
Modo-OR7C64P scaffold_11688 20772 21703 +

List of all CLICs
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