HORDE: Information for CLIC#46

Information for CLIC#46


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#46 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr19@15.9 chr8@71.2 chr16@18.2 chr20@49.3 s11661@2.3
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr19@15.9

SymbolChromosomeStartEndStrand
OR10H4 19 15949008 15949955 +
OR10H2 19 15728044 15728988 +
OR10H3 19 15741393 15742340 +
OR10H5 19 15794049 15794993 +
OR1AB1P 19 16051977 16052715 +
OR10H1 19 15807084 15808037 -

mouse:
OR members in cluster chr8@71.2

SymbolChromosomeStartEndStrand
Or2z9 chr8 72,099,762 72,100,703 +
Or1ab2 chr8 72,109,376 72,110,506 +

rat:
OR members in cluster chr16@18.2

SymbolChromosomeStartEndStrand

dog:
OR members in cluster chr20@49.3

SymbolChromosomeStartEndStrand
OR10H4 chr20 46494276 46495304 -
OR2Z3 chr20 46432097 46432969 -
OR1AB2 chr20 46391448 46392392 -
OR1AE1 chr20 46578650 46579582 -
OR10H1 chr20 46558782 46559723 -
OR10H6 chr20 46543258 46544214 +
OR10H4B chr20 46532526 46533545 +
OR10H4F chr20 46477679 46478524 +
OR10H4D chr20 46486639 46487565 +
OR10H2 chr20 46464193 46465149 +
OR10H4E chr20 46525196 46526116 +
OR10H4C chr20 46507601 46508527 -
OR1AB3 chr20 46407860 46408798 -

opossum:
OR members in cluster s11661@2.3

SymbolChromosomeStartEndStrand
Modo-OR1AB5 scaffold_11661 2279006 2279945 -
Modo-OR10H23 scaffold_11661 2628961 2629903 -
Modo-OR1AB11 scaffold_11661 2331712 2332651 -
Modo-OR1AB2 scaffold_11661 2014721 2015660 -
Modo-OR1AB14 scaffold_11661 2261238 2262177 -
Modo-OR1F16P scaffold_11661 2558287 2558706 +
Modo-OR1AB4 scaffold_11661 2091576 2092521 -
Modo-OR1AE1P scaffold_11661 2575214 2576140 +
Modo-OR1AB10P scaffold_11661 2190618 2191558 -
Modo-OR1AB8 scaffold_11661 2294308 2295247 -
Modo-OR1AE2 scaffold_11661 2551996 2552929 +
Modo-OR10H22P scaffold_11661 2413783 2414694 -
Modo-OR10H24 scaffold_11661 2515020 2515962 +
Modo-OR1AB9 scaffold_11661 2238062 2239049 -
Modo-OR1AB6 scaffold_11661 2051166 2052156 -
Modo-OR10H21 scaffold_11661 2612845 2613787 +


List of all CLICs
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