HORDE: Information for CLIC#47

Information for CLIC#47


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#47 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr19@62 chr7@5.7 chr1@65.8 chr1@104 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr19@62

SymbolChromosomeStartEndStrand
OR5AH1P 19 56760864 56761232 +

mouse:
OR members in cluster chr7@5.7

SymbolChromosomeStartEndStrand
Or6z5 chr7 6,474,112 6,475,050 +
Or5bw2 chr7 6,569,993 6,570,916 +
Or2bd2 chr7 6,439,902 6,440,864 +
Or6z6 chr7 6,487,916 6,488,872 -
Or6z7 chr7 6,480,219 6,481,154 -
Or6z3 chr7 6,460,511 6,461,452 +
Or6z1 chr7 6,501,289 6,502,224 -

rat:
OR members in cluster chr1@65.8

SymbolChromosomeStartEndStrand
Or6z5 chr1 70,484,950 70,485,888 -
Or6z7 chr1 70,480,941 70,481,876 +
Or6z3 chr1 70,495,406 70,496,347 -
Or6z1 chr1 70,454,322 70,455,257 +
Or10am5 chr1 70,437,776 70,438,726 +

dog:
OR members in cluster chr1@104

SymbolChromosomeStartEndStrand
OR6Z1 chr1 101309377 101310312 -
OR6Z3 chr1 101283616 101284656 +
OR13S1P chr1 101336194 101337145 -
OR5BW1P chr1 101208219 101209134 -
OR6Z2 chr1 101292827 101293831 -


List of all CLICs
Horde homepage