HORDE: Information for CLIC#48

Information for CLIC#48


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#48 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chrX@130.3 chrX@44.5 chrX@44.9 chrX@136.4 chrX@137.1 chrX@105.6 s11989@0.2
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chrX@130.3

SymbolChromosomeStartEndStrand
OR7L1P X 131596121 131597203 +
OR11N1P X 131324334 131325313 -
OR2AF1P X 131619046 131619935 +
OR5AW1P X 131341529 131342452 -
OR11Q1P X 131204095 131205043 +
OR13K1P X 131562729 131563812 +
OR5BH1P X 131398049 131398957 -
OR1AA1P X 131424301 131425268 +
OR13H1 X 131544074 131544997 +

mouse:
OR members in cluster chrX@44.5

SymbolChromosomeStartEndStrand
Or5bh3 chrX 50,009,309 50,010,235 -

OR members in cluster chrX@44.9

SymbolChromosomeStartEndStrand
Or1aa2 chrX 50,425,499 50,426,509 -

rat:
OR members in cluster chrX@136.4

SymbolChromosomeStartEndStrand
Or11n2 chrX 136,892,141 136,893,094 -
Or5o1 chrX 136,736,795 136,737,874 -
Or5bh3 chrX 137,014,346 137,015,266 -
Or11q2 chrX 136,715,498 136,716,657 +

OR members in cluster chrX@137.1

SymbolChromosomeStartEndStrand
Or1aa2 chrUn_KL568460v1 62,647 63,582 -

dog:
OR members in cluster chrX@105.6

SymbolChromosomeStartEndStrand
OR13H2P chrX 102640012 102640936 +
OR5BH3 chrX 102531219 102532139 -
OR1AG1P chrX 102562881 102563813 +

opossum:
OR members in cluster s11989@0.2

SymbolChromosomeStartEndStrand
Modo-OR6AJ1P scaffold_11989 72680 73450 -
Modo-OR13H2 scaffold_11989 249405 250329 +
Modo-OR13K3 scaffold_11989 305895 306834 +
Modo-OR13K2 scaffold_11989 262381 263317 +
Modo-OR2AF2 scaffold_11989 344206 345145 +
Modo-OR5CA1 scaffold_11989 192665 193604 -
Modo-ORUN1 scaffold_11989 14578 15063 +
Modo-OR5Z1P scaffold_11989 110907 111834 -
Modo-OR8Z1P scaffold_11989 165439 166211 -


List of all CLICs
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