HORDE: Information for CLIC#5

Information for CLIC#5

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#5 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr1@244.6 chr11@58.4 chr11@59.3 chr16@18.2 chr7@80.4 chr10@44.6 chr10@45.9 chr11@83.7 chr1@142.7 chr14@4.6 chr16@4.4 chr8@3.6 s13645@0.9
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr1@244.6

SymbolChromosomeStartEndStrand
OR2T35 1 248638290 248639258 -
OR14C36 1 248348775 248349710 +
OR2L1P 1 247990267 247991191 +
OR2AK2 1 247965377 247966336 +
OR2B11 1 247451032 247451982 -
OR2M3 1 248203068 248204003 +
OR2L13 1 248099376 248100311 +
OR2T8 1 247921018 247921953 +
OR2M4 1 248238929 248239861 +
OR14A16 1 247814803 247815729 -
OR3D1P 1 247666881 247667816 +
OR2T27 1 248649934 248650884 -
OR2T5 1 248488607 248489533 +
OR2T33 1 248272855 248273814 -
OR2T10 1 248592833 248593768 -
OR2M1P 1 248121932 248122861 +
OR2AJ1 1 247933766 247934752 +
OR2T11 1 248626181 248627128 -
OR2X1P 1 247938889 247939633 +
OR2T29 1 248558547 248559473 -
OR14A2 1 247723102 247724043 -
OR2T6 1 248387609 248388532 +
OR6F1 1 247711832 247712755 -
OR2T1 1 248406148 248407101 +
OR2G3 1 247605586 247606512 +
OR14K1 1 247738615 247739556 +
OR2T3 1 248473351 248474304 +
OR2C3 1 247531552 247532511 -
OR2AS2P 1 248498310 248498659 +
OR2W5 1 247491128 247492087 +
OR14I1 1 248681372 248682304 -
OR2T7 1 248441207 248442130 +
OR2M7 1 248323633 248324568 -
OR6R1P 1 247833360 247834288 -
OR2T2 1 248452798 248453769 +
OR1C1 1 247757465 247758406 -
OR2L2 1 248038268 248039203 +
OR2T12 1 248294619 248295578 -
OR2AS1P 1 248549422 248549903 -
OR2L5 1 248021948 248022883 +
OR2M5 1 248145148 248146083 +
OR2G2 1 247588360 247589310 +
OR2M2 1 248179986 248181026 +
OR9H1P 1 247774910 247775833 +
OR2L6P 1 248003131 248004066 +
OR2T4 1 248361635 248362624 +
OR2L3 1 248060682 248061617 +
OR2T34 1 248573804 248574757 -
OR13G1 1 247672118 247673041 -
OR2L9P 1 247974742 247975675 +
OR2L8 1 247948858 247949793 +
OR2W3 1 247895587 247896528 +
OR11L1 1 247840931 247841896 -
OR2G6 1 248521647 248522594 +
OR2T32P 1 248083636 248084596 -

mouse:
OR members in cluster chr11@58.4

SymbolChromosomeStartEndStrand
Or2z2 chr11 58,455,003 58,455,947 -
Or2t44 chr11 58,786,236 58,787,225 +
Or2ak5 chr11 58,720,129 58,721,046 -
Or2ab1 chr11 58,597,392 58,598,390 +
Or2t48 chr11 58,529,040 58,529,984 -
Or5af2 chr11 58,817,010 58,817,933 +
Or9e1 chr11 58,841,116 58,842,039 +
Or2t47 chr11 58,551,308 58,552,237 -
Or2t49 chr11 58,501,601 58,502,572 -
Or2y9-ps chr11 51,142,532 51,143,464 +
Or2t45 chr11 58,777,961 58,779,055 +
Or2av9 chr11 58,489,722 58,490,753 -
Or11l3 chr11 58,625,076 58,626,044 -
Or2ak6 chr11 58,701,703 58,702,620 +

OR members in cluster chr11@59.3

SymbolChromosomeStartEndStrand
Or8u10 chr2 86,084,813 86,085,775 -
Or8k28 chr2 86,455,331 86,456,269 -

OR members in cluster chr16@18.2

SymbolChromosomeStartEndStrand
Or2m12 chr16 19,285,797 19,286,741 -
Or2l13b chr16 19,529,983 19,531,197 -
Or2aj5 chr16 19,605,728 19,606,666 -
Or2l5 chr16 19,514,699 19,515,634 -
Or2m13 chr16 19,407,079 19,408,017 -
Or2aj6 chr16 19,624,160 19,625,101 -
Or2l13 chr16 19,486,840 19,487,775 +

OR members in cluster chr7@80.4

SymbolChromosomeStartEndStrand
Or14a259 chr7 86,363,379 86,364,335 -
Or14c45 chr7 86,526,759 86,527,688 +
Or14c40 chr7 86,663,664 86,664,671 +
Or14c39 chr7 86,694,458 86,695,381 +
Or14a258 chr7 86,385,660 86,386,658 -
Or14c46 chr7 86,268,792 86,269,787 -
Or6aa1 chr7 86,394,540 86,395,496 -
Or6f1 chr7 86,321,027 86,321,950 -
Or14c43 chr7 86,465,413 86,466,402 +
Or14a260 chr7 86,335,456 86,336,394 -
Or13g1 chr7 86,306,188 86,307,111 -
Or14a256 chr7 86,615,639 86,616,643 -
Or14c41 chr7 86,585,277 86,586,203 +
Or14a257 chr7 86,488,554 86,489,564 -

rat:
OR members in cluster chr10@44.6

SymbolChromosomeStartEndStrand
Or2z2 chr10 43,894,432 43,895,568 -
Or2ak5b chr10 44,568,615 44,569,532 +
Or2t47d chr10 44,122,019 44,122,978 -
Or2t46-ps chr10 44,060,878 44,062,008 -
Or2w26-ps chr10 44,606,511 44,607,605 +
Or2ak4e chr10 44,547,564 44,548,481 +
Or2t51-ps chr10 44,180,259 44,180,756 -
Or2ak5d chr10 44,470,998 44,471,915 -
Or2av9 chr10 43,930,090 43,931,094 -
Or2t44 chr10 44,730,354 44,731,343 +
Or2t29 chr10 44,146,100 44,147,053 -
Or2ab1 chr10 44,228,800 44,229,744 +
Or2t47c chr10 43,946,568 43,947,512 -
Or9e1b chr10 45,159,342 45,160,265 +
Or9e1 chr10 44,804,631 44,805,554 +
Or2t47 chr10 44,156,383 44,157,330 -
Or2t45 chr11 55,497,234 55,498,160 +
Or2t45b chr11 55,474,820 55,475,743 +
Or2ak6b chr10 44,650,570 44,651,487 +
Or2t48c-ps chr10 44,039,966 44,040,475 -
Or2ak6c chr10 44,407,475 44,408,392 +
Or5af1c chr10 44,789,217 44,790,140 +
Or2t47b chr10 44,094,834 44,095,793 -
Or2t44b chr10 44,714,212 44,715,198 +
Or2ak4 chr10 44,375,304 44,376,221 -
Or2av10 chr10 43,911,950 43,912,963 -
Or2ak4c chr10 44,679,832 44,680,746 +
Or2t47e chr10 44,081,354 44,082,313 -
Or2ak6e chr10 44,330,897 44,331,814 +
Or2t52-ps chr10 44,201,348 44,201,902 -
Or2t48-ps chr10 44,025,637 44,026,344 -
Or2ak4b-ps chr10 44,594,231 44,595,346 -
Or2ak5f chr10 44,527,468 44,528,379 +
Or5af1b chr10 44,749,541 44,750,464 -
Or2t29b-ps chr10 44,187,490 44,188,626 +
Or2t48b chr10 43,997,607 43,998,551 -
Or2ak5e chr10 44,347,881 44,348,795 -
Or5af1 chr10 44,774,280 44,775,203 +
Or11l3 chr10 44,255,977 44,256,993 -
Or2ak5g-ps chr10 44,420,687 44,421,406 -
Or2ak6 chr10 44,458,092 44,459,009 +
Or2ak5-ps chr10 44,632,188 44,633,106 +

OR members in cluster chr10@45.9

SymbolChromosomeStartEndStrand
Or2w25 chr10 45,966,926 45,967,828 +
Or2aa1 chr10 45,939,181 45,940,137 -
Or2b11 chr10 45,922,876 45,923,829 -

OR members in cluster chr11@83.7

SymbolChromosomeStartEndStrand
Or2m12 chr11 85,398,973 85,399,917 +
Or2aj4b chr11 85,158,491 85,159,432 +
Or2aj4-ps chr11 85,189,277 85,190,223 +
Or2l5 chr11 85,030,872 85,031,807 +
Or2l13c chr11 85,014,910 85,015,845 +
Or2l13 chr11 85,313,093 85,314,028 -

OR members in cluster chr1@142.7

SymbolChromosomeStartEndStrand
Or14c40 chr1 150,130,084 150,131,073 +
Or14c39 chr1 150,310,226 150,311,254 +
Or14e2-ps chr1 150,254,384 150,254,978 -
Or14n1 chr1 149,963,544 149,964,536 +
Or14c43 chr1 150,067,242 150,068,234 +
Or14a260 chr1 149,632,091 149,633,029 -
Or6f1 chr1 149,602,349 149,603,272 -
Or14c48 chr1 150,006,153 150,007,187 +
Or13g1 chr1 149,578,360 149,579,280 -
Or14c43b-ps chr1 150,034,621 150,035,760 +
Or14a258b chr1 149,858,532 149,859,479 -
Or14c44-ps chr1 149,717,672 149,718,847 +
Or14f1-ps chr1 150,201,459 150,202,088 -
Or14c44b-ps chr1 149,651,715 149,652,239 -
Or14c39b chr1 150,225,373 150,226,299 +
Or14a257b chr1 150,209,399 150,210,418 -
Or14a261-ps chr1 150,280,836 150,281,622 -
Or6aa1 chr1 149,682,404 149,683,438 -
Or6aa1b chr1 149,913,650 149,914,687 -
Or14a257c chr1 150,261,263 150,262,213 -
Or14e1-ps chr1 150,158,423 150,158,999 -
Or14a257d chr1 150,100,239 150,101,177 -
Or14a257 chr1 150,172,378 150,173,331 -

dog:
OR members in cluster chr14@4.6

SymbolChromosomeStartEndStrand
OR2M8P chr14 2372214 2373135 +
OR2L13 chr14 2180540 2181529 -
OR14I2 chr14 2783882 2784823 -
OR2AK3 chr14 1297331 1298182 +
OR2T13 chr14 2146081 2147055 +
OR2T27 chr14 2650695 2651645 +
OR2T24 chr14 2104120 2105055 +
OR2AV2 chr14 1896389 1897354 +
OR2AX2 chr14 2869791 2870900 +
OR2M10P chr14 2422677 2423615 +
OR2T22 chr14 2222431 2223372 +
OR2AX1 chr14 2910616 2911557 +
OR2T16 chr14 1501305 1502246 -
OR2AZ1 chr14 1731654 1732586 -
OR2T4B chr14 2712137 2713096 -
OR2T11 chr14 2695311 2696267 +
OR2T20 chr14 2271769 2272758 +
OR2T6 chr14 2595008 2595964 +
OR2T1 chr14 2613990 2614943 +
OR2T15 chr14 2127409 2128401 +
OR2M9 chr14 2351637 2352569 -
OR2L17 chr14 1387378 1388310 -
OR2L3B chr14 1341101 1342036 -
OR2T4C chr14 2466120 2467079 +
OR2T2 chr14 2663502 2664473 +
OR2L5 chr14 2051218 2052162 +
OR2AV1 chr14 1993715 1994650 +
OR2L5C chr14 1419376 1420311 -
OR2M11P chr14 2400682 2401626 +
OR6AB1P chr14 1661957 1662761 -
OR2T4 chr14 2527049 2528008 +
OR2L3 chr14 2072699 2073634 +
OR13G1 chr14 1233712 1234635 +
OR11L2 chr14 1625799 1626815 +
OR2W3 chr14 1572131 1573072 -
OR2AK4P chr14 2088434 2089337 +
OR2G6 chr14 2848252 2849196 +
OR2T4D chr14 2763588 2764547 -

OR members in cluster chr16@4.4

SymbolChromosomeStartEndStrand
OR2Z2 chr16 13547361 13548236 +

OR members in cluster chr8@3.6

SymbolChromosomeStartEndStrand
OR4L1 chr8 795899 796834 -
OR2W13P chr8 444220 445156 +
OR2B11 chr8 378561 379517 -
OR6C4 chr8 705870 706793 +
OR2H10 chr8 332805 333674 -
OR6AA1 chr8 737285 738223 +
OR4K13CP chr8 830731 831612 +
OR2W11 chr8 415296 416237 +
OR11S2 chr8 647261 648217 +
OR2C3 chr8 469181 470128 -
OR2G3P chr8 564817 565740 -
OR11S1 chr8 611594 612550 +

opossum:
OR members in cluster s13645@0.9

SymbolChromosomeStartEndStrand
Modo-OR2T1 scaffold_13645 754097 755141 +
Modo-OR6R3P scaffold_13645 1047130 1047878 +
Modo-OR11L2 scaffold_13645 1036569 1037511 +
Modo-OR2Z2 scaffold_13645 419933 420800 -
Modo-OR13G1 scaffold_13645 1301558 1302476 +
Modo-OR2W12 scaffold_13645 894506 895451 -
Modo-OR2T11 scaffold_13645 822786 823743 +
Modo-OR2T23 scaffold_13645 686561 687518 +
Modo-OR6R1 scaffold_13645 1112532 1113555 +
Modo-OR2W14 scaffold_13645 1406350 1407292 -
Modo-OR2T39P scaffold_13645 494856 495801 -
Modo-OR2T37 scaffold_13645 596842 597802 +
Modo-OR2B11 scaffold_13645 1151017 1151971 -
Modo-OR2T21 scaffold_13645 515469 516420 -
Modo-OR2C6 scaffold_13645 1372030 1373035 -
Modo-OR2T25 scaffold_13645 788374 789322 +
Modo-OR2T29 scaffold_13645 627434 628370 +
Modo-OR11V1P scaffold_13645 1364287 1365203 +

List of all CLICs
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