HORDE: Information for CLIC#7

Information for CLIC#7


CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#7 composed of the following clusters*:

Human Mouse Rat Dog Opossum
chr2@240.7 chr1@92.4 chr9@92 chr25@53.2 -
* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

human:
OR members in cluster chr2@240.7

SymbolChromosomeStartEndStrand
OR5S1P 2 240109102 240110049 +
OR6B3 2 240045080 240046072 -
OR9S24P 2 240079433 240080360 +
OR6B2 2 240029494 240030429 -

mouse:
OR members in cluster chr1@92.4

SymbolChromosomeStartEndStrand
Or9s23 chr1 92,573,173 92,574,141 +
Or5s2 chr1 92,619,908 92,620,906 +
Or6b3 chr1 92,511,091 92,512,026 -
Or6z6 chr7 6,487,916 6,488,872 -
Or5s4 chr1 92,596,521 92,597,489 +
Or5s3 chr1 92,607,839 92,608,804 +
Or6b2 chr1 92,479,684 92,480,619 -
Or9s27 chr1 92,588,257 92,589,294 +

rat:
OR members in cluster chr9@92

SymbolChromosomeStartEndStrand
Or5s3b chr9 99,763,768 99,764,730 +
Or6b3 chr9 99,680,044 99,680,979 -
Or5s3 chr9 99,776,886 99,777,851 +
Or5s4 chr9 99,753,099 99,754,067 +
Or9s23b chr9 99,720,856 99,721,824 +
Or6b2b chr9 99,666,757 99,667,689 -
Or6b2 chr9 99,658,490 99,659,854 -
Or5s2 chr9 99,795,678 99,796,676 +
Or9s23 chr9 99,735,011 99,735,979 +
Or9s27 chr9 99,745,639 99,746,670 +

dog:
OR members in cluster chr25@53.2

SymbolChromosomeStartEndStrand
OR9S5 chr25 50208914 50209861 +
OR9S7 chr25 50091926 50092873 +
OR6B2D chrUn_JH374172 7897 8832 +
OR9S12 chr25 50198669 50199634 +
OR9S11 chr25 50160041 50160988 +
OR9S3 chr25 50069220 50070167 +
OR9S25 chr25 50241053 50242000 +
OR9S6 chr25 50051449 50052396 +
OR9S26 chr25 50138852 50139799 +
OR6B2C chr25 49982586 49983521 -
OR9S19 chr25 50108247 50109194 +
OR9S8P chr25 50148327 50149252 +
OR9S16 chr25 50231717 50232664 +
OR9S21 chr25 50258029 50258976 +
OR9S20 chr25 50185415 50186362 +


List of all CLICs
Horde homepage