HORDE: Information for CLIC#8

Information for CLIC#8

CLIC is CLuster In Conservation, a set of multi-species conserved gene arrays.

Using a novel algorithm, we identified 48 multi-species CLICs containing more than 90% of the mammalian olfactory receptor genes.

Additional details can be found at:

Ancient Genomic Architecture for Mammalian Olfactory Receptor Clusters

Ronny Aloni, Tsviya Olender and Doron Lancet

Genome Biology, 2006 Oct 1;7(10):R88

CLIC#8 composed of the following clusters^*:

Human Mouse Rat Dog Opossum

- chr14@12.8 chr15@12.5 - -

^* Clusters were selected with a maximal intergenic distance of 300kb,different than the 100kb used in HORDE

Human	Mouse	Rat	Dog	Opossum
-	chr14@12.8	chr15@12.5	-	-

mouse:
OR members in cluster chr14@12.8

Symbol Chromosome Start End Strand
Or2t6 chr14 14,175,133 14,176,080 -

Or2t1 chr14 14,328,113 14,329,063 +

Symbol	Chromosome	Start	End	Strand
Or2t6	chr14	14,175,133	14,176,080	-
Or2t1	chr14	14,328,113	14,329,063	+

rat:
OR members in cluster chr15@12.5

Symbol Chromosome Start End Strand
Or2t6 chr15 12,363,377 12,364,321 +

Or2t1 chr15 12,261,125 12,262,075 -

Or2t35 chr15 12,128,255 12,129,220 -

Symbol	Chromosome	Start	End	Strand
Or2t6	chr15	12,363,377	12,364,321	+
Or2t1	chr15	12,261,125	12,262,075	-
Or2t35	chr15	12,128,255	12,129,220	-

List of all CLICs
Horde homepage