OR10A3 Olfactory Receptor
Gene Symbol | OR10A31 (View this gene in GeneCards) |
Family | 10 |
Subfamily | A |
Pseudogene | No |
CORP pseudogene probability score | 0.04 (functional) |
Aliases | HSHTPCRX12, OR11-97, HsOR11.5.8, ORL45 |
External Ids | HGNC: 8162 GeneBank: AB065768, AB065940, AF399634, AY284325-AY284356, BK004404, HSHTPRX12, NM_001003745 ORDB: ORL45 |
Build #39 labels | OR10A3 |
Chromosomal location | 11:7,938,579-7,939,520 (-) |
Cluster | 11@8 |
Synteny | CLIC#25 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR10A6 | 85.3% | 313 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR10A3E | 87% | 314 |
Dog | OR10A6 | 84% | 314 |
Mouse | Or10a3 | 83% | 311 |
Mouse | Or10a3b | 81% | 313 |
Rat | Or10a3 | 83% | 312 |
Rat | Or10a3d | 81% | 313 |
Cow | OR10A3F | 89% | 314 |
Cow | OR10A3HP | 87% | 314 |
Orang | OR10A3K | 94% | 313 |
Orang | OR10A3J | 92% | 313 |
Horse | OR10A3L | 90% | 314 |
Chimp | OR10A3P | 97% | 313 |
Expression evidences
Source | Accession |
---|---|
ESTs | FN165431 |
mRNA | AB529269 |
GNF Atlas2 | gnf1h05415_at |
GNF Atlas2 | gnf1h05416_s_at |
Sequence information
Nucleotide sequence |
ATGAAAAGACAAAATCAAAGCTGTGTGGTTGAATTCATCCTCCTGGGCTTTTCTAACTTT CCTGAGCTCCAGGTGCAGCTCTTTGGGGTTTTCCTAGTTATTTATGTGGTGACCCTGATG GGAAATGCCATCATTACAGTCATCATCTCCTTAAACCAGAGCCTCCACGTTCCCATGTAC CTGTTCCTCCTGAACCTATCTGTGGTGGAGGTGAGTTTCAGTGCAGTCATTACGCCTGAA ATGCTGGTGGTGCTCTCTACTGAGAAAACTATGATTTCTTTTGTGGGCTGTTTTGCACAG ATGTATTTCATCCTTCTTTTTGGTGGGACTGAATGTTTTCTCCTGGGAGCGATGGCTTAT GACCGATTTGCTGCAATTTGCCATCCTCTGAACTACCCAGTGATTATGAACAGAGGGGTT TTTATGAAATTAGTAATATTCTCATGGATCTCAGGGATCATGGTGGCTACTGTGCAGACC ACTTGGGTATTTAGTTTTCCATTTTGTGGCCCCAATGAAATTAATCATCTCTTCTGTGAG ACTCCCCCGGTACTAGAGCTTGTGTGTGCAGACACCTTCTTATTTGAAATCTATGCCTTC ACAGGCACCATTTTGATTGTTATGGTTCCTTTCTTGTTGATCCTCTTGTCTTACATTCGA GTTCTGTTTGCCATCCTGAAGATGCCATCAACTACTGGGAGACAAAAGGCCTTTTCCACC TGTGCCTCTCACCTCACATCTGTGACCCTGTTCTATGGCACAGCCAATATGACTTATTTA CAACCCAAATCTGGCTACTCACCCGAAACCAAGAAACTGATCTCATTGGCTTACACGTTG CTTACCCCTCTGCTCAATCCGCTCATCTATAGCTTACGAAACAGTGAGATGAAGAGGACT TTGATAAAACTATGGCGAAGAAAAGTGATTTTACACACATTC |
Conceptual translation |
MKRQNQSCVVEFILLGFSNFPELQVQLFGVFLVIYVVTLMGNAIITVIISLNQSLHVPMY LFLLNLSVVEVSFSAVITPEMLVVLSTEKTMISFVGCFAQMYFILLFGGTECFLLGAMAY DRFAAICHPLNYPVIMNRGVFMKLVIFSWISGIMVATVQTTWVFSFPFCGPNEINHLFCE TPPVLELVCADTFLFEIYAFTGTILIVMVPFLLILLSYIRVLFAILKMPSTTGRQKAFST CASHLTSVTLFYGTANMTYLQPKSGYSPETKKLISLAYTLLTPLLNPLIYSLRNSEMKRT LIKLWRRKVILHTF Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | NS | T/C | N/S | 1000GP (YRI, YRI, YRI, YRI) |
11 | 7,960,751 | 7,960,751 | Del(1) | -/A | rs35194212 (DbSNP) | |
11 | 7,961,006 | 7,961,006 | NS | G/T | P/H | rs11606157 (DbSNP) |
11 | 7,961,010 | 7,961,010 | NS | A/C | F/V | rs16934214 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
N172S | V163I | Q159E | Y132H | F20V | % Freq | CORP | |
---|---|---|---|---|---|---|---|
1 | N | V | Q | Y | F | 97.24 | 0.098 |
2 | N | V | Q | Y | V | 1.38 | 0.098 |
3 | S | V | Q | Y | F | 0.92 | 0.098 |
4 | N | V | E | Y | F | 0.23 | 0.098 |
5 | N | I | Q | Y | F | 0.15 | 0.098 |
6 | N | V | Q | H | F | 0.08 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR10A3.aApr07-unspliced | main_exon | 3UTR | chr11 | 7,938,576 | 7,938,579 | - |
CDS | chr11 | 7,938,579 | 7,939,520 | - |